ggKbase home page

scnpilot_solids1_trim150_scaffold_511

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_511_1
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2..847)
DNA (846bp) protein (282aa)
Esterase/lipase-like protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VXR5_DYAFD
esterase/lipase-like protein
Esterase/lipase-like protein {ECO:0000313|EMBL:ACT95098.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_solids1_trim150_scaffold_511_2
unknown

Not on your lists

1245..1775
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002F3A67D
scnpilot_solids1_trim150_scaffold_511_3
unknown

Not on your lists

1796..2524
DNA (729bp) protein (243aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_511_4
CG_Flavo_02, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2711..4894
DNA (2184bp) protein (728aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00036B4C59 rbh
hypothetical protein
Tax=CG_Flavo_02
scnpilot_solids1_trim150_scaffold_511_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5144..5839)
DNA (696bp) protein (232aa)
DNA repair protein RadC n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLK8_NIAKG rbh
DNA repair protein RadC; K03630 DNA repair protein RadC rbh
DNA repair protein RadC {ECO:0000313|EMBL:AEV96577.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_511_6
unknown

Not on your lists

5918..6130
DNA (213bp) protein (71aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_511_7
unknown

Not on your lists

comp(6108..6221)
DNA (114bp) protein (38aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_511_8
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6264..7214
DNA (951bp) protein (317aa)
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:KIC93215.1}; EC=2.7.6.1 {ECO:0000313|EMBL:KIC93215.1};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ribose-phosphate pyrophosphokinase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] rbh
Ribose-phosphate pyrophosphokinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLL0_NIAKG rbh
scnpilot_solids1_trim150_scaffold_511_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


7239..7871
DNA (633bp) protein (211aa)
50S ribosomal protein L25 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLL1_NIAKG rbh
50S ribosomal protein L25P; K02897 large subunit ribosomal protein L25 rbh
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_511_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

7940..8518
DNA (579bp) protein (193aa)
peptidyl-tRNA hydrolase; K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037BFCB3
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_511_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8718..9329
DNA (612bp) protein (204aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLL4_NIAKG
fumarylacetoacetate (FAA) hydrolase
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:AEV96583.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_511_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9535..10107)
DNA (573bp) protein (191aa)
Collagen triple helix repeat-containing protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NNN2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17494.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_511_13
Indibacter alkaliphilus, Indibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10215..10790
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035E47B5
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EOZ93673.1}; TaxID=1189612 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae.;" source="Indibacter alkaliphilus LW1.;"
sigma-70 family RNA polymerase sigma factor
scnpilot_solids1_trim150_scaffold_511_14
Indibacter alkaliphilus, Indibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10795..11559
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000369B232
Uncharacterized protein {ECO:0000313|EMBL:EOZ93674.1}; TaxID=1189612 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae.;" source="Indibacter alkaliphilus LW1.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_511_15
unknown

Not on your lists

comp(11812..11946)
DNA (135bp) protein (45aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_511_16
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12014..12595
DNA (582bp) protein (194aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6E9D0_9SPHI
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EDM37761.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
RNA polymerase sigma-70 factor
scnpilot_solids1_trim150_scaffold_511_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12671..13711
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035EFC72
Uncharacterized protein {ECO:0000313|EMBL:AHF17845.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
anti-FecI sigma factor FecR
scnpilot_solids1_trim150_scaffold_511_18
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13804..17454
DNA (3651bp) protein (1217aa)
TonB-dependent receptor plug n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J837_CYCMS rbh
TonB-dependent receptor plug rbh
TonB-dependent receptor plug {ECO:0000313|EMBL:AEL28706.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
scnpilot_solids1_trim150_scaffold_511_19
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

17467..19152
DNA (1686bp) protein (562aa)
Uncharacterized protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J836_CYCMS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEL28705.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
scnpilot_solids1_trim150_scaffold_511_20
unknown

Not on your lists

19282..19407
DNA (126bp) protein (42aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_511_21
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19456..22218
DNA (2763bp) protein (921aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035EF680 rbh
Uncharacterized protein {ECO:0000313|EMBL:ETZ23243.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_511_22
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22818..23234
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Bergeyella zoohelcum ATCC 43767 RepID=K1MHV3_9FLAO
hypothetical protein
Tax=GWA2_Bacteroidetes_31_9_curated
scnpilot_solids1_trim150_scaffold_511_23
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23336..24847
DNA (1512bp) protein (504aa)
sulfatase n=1 Tax=Segetibacter koreensis RepID=UPI00037C4F4E rbh
Sulfatase {ECO:0000313|EMBL:KIC95135.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_511_24
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24899..26314
DNA (1416bp) protein (472aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000362F0F4 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF16229.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_511_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26332..27039)
DNA (708bp) protein (236aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TKW0_NIAKG
CarD family transcriptional regulator
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:AEV99789.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_511_26
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27311..27916
DNA (606bp) protein (202aa)
Ribosomal protein L11 methyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TKV9_NIAKG
Methyltransferase {ECO:0000313|EMBL:KIC94682.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
50S ribosomal protein L11 methyltransferase
scnpilot_solids1_trim150_scaffold_511_27
unknown

Not on your lists

27948..28220
DNA (273bp) protein (91aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_511_28
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28261..29919
DNA (1659bp) protein (553aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003630904 rbh
Sulfate permease {ECO:0000313|EMBL:KIC94620.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
SulP family sulfate permease; K03321 sulfate permease, SulP family
scnpilot_solids1_trim150_scaffold_511_29
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30029..30703)
DNA (675bp) protein (225aa)
Peptide methionine sulfoxide reductase msrA; K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGI7_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC93717.1}; Flags: Fragment;; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
scnpilot_solids1_trim150_scaffold_511_30
unknown

Not on your lists

comp(30863..31090)
DNA (228bp) protein (76aa)

This feature has no annotations

Displaying items 1-30 of 52 in total

View Taxonomy