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scnpilot_solids1_trim150_scaffold_1200

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1200_1
unknown

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3..155
DNA (153bp) protein (51aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037A3021
scnpilot_solids1_trim150_scaffold_1200_2
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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222..2063
DNA (1842bp) protein (614aa)
Uncharacterized protein n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZQ92_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EON76174.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1200_3
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2104..3390)
DNA (1287bp) protein (429aa)
Peptidase M28 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL86_NIAKG rbh
Peptidase M28 family protein {ECO:0000313|EMBL:GAO41726.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
peptidase M28 rbh
scnpilot_solids1_trim150_scaffold_1200_4
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3611..4354)
DNA (744bp) protein (248aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL87_NIAKG
Transcriptional regulator {ECO:0000313|EMBL:KIC96192.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
LytTR family two component transcriptional regulator
scnpilot_solids1_trim150_scaffold_1200_5
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4484..5545)
DNA (1062bp) protein (354aa)
Putative signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL88_NIAKG rbh
Histidine kinase {ECO:0000313|EMBL:KIC96125.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
putative signal transduction histidine kinase rbh
scnpilot_solids1_trim150_scaffold_1200_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5737..7674
DNA (1938bp) protein (646aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
1-deoxy-D-xylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] rbh
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL89_NIAKG rbh
scnpilot_solids1_trim150_scaffold_1200_7
unknown

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7700..7894
DNA (195bp) protein (65aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1200_8
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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7875..9968
DNA (2094bp) protein (698aa)
Oligopeptidase B {ECO:0000313|EMBL:ADZ77811.1}; EC=3.4.21.83 {ECO:0000313|EMBL:ADZ77811.1};; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
oligopeptidase B; K01354 oligopeptidase B [EC:3.4.21.83] rbh
Oligopeptidase B n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CE50_SPHS2 rbh
scnpilot_solids1_trim150_scaffold_1200_9
Flavobacteria bacterium BAL38, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9982..10605)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J504_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EAZ95741.1}; TaxID=391598 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteria bacterium BAL38.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1200_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10652..10939)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035CB7CF
DNA-binding protein {ECO:0000313|EMBL:AHF16482.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
KilA-N, DNA-binding domain-containing protein
scnpilot_solids1_trim150_scaffold_1200_11
unknown

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comp(11035..11187)
DNA (153bp) protein (51aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1200_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11194..13728
DNA (2535bp) protein (845aa)
ATP dependent helicase, Lhr family; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] rbh
ATP dependent helicase, Lhr family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9W6_NIAKG rbh
ATP dependent helicase, Lhr family {ECO:0000313|EMBL:AEW01310.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_1200_13
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13796..15031)
DNA (1236bp) protein (412aa)
glutamate dehydrogenase; K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4] rbh
Glutamate dehydrogenase n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C288_SPHS2 rbh
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
Displaying 13 items

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