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scnpilot_solids1_trim150_scaffold_82

Search features with annotation key words

Displaying items 1-30 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_82_1
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..531
DNA (531bp) protein (177aa)
RNA polymerase sigma factor RpoD n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCY9_ACIET
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
RNA polymerase sigma-70 subunit RpoD; K03086 RNA polymerase primary sigma factor
scnpilot_solids1_trim150_scaffold_82_2
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(556..1920)
DNA (1365bp) protein (455aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000313C438
MFS transporter {ECO:0000313|EMBL:EXL07953.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
major facilitator superfamily protein
scnpilot_solids1_trim150_scaffold_82_3
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2047..3576
DNA (1530bp) protein (510aa)
Outer membrane protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L6G8_FRAAD rbh
outer membrane protein rbh
Outer membrane protein {ECO:0000313|EMBL:AFC85957.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
scnpilot_solids1_trim150_scaffold_82_4
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3573..4592
DNA (1020bp) protein (340aa)
Multidrug resistance efflux pump n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RXE0_9SPHN rbh
multidrug resistance efflux pump rbh
Multidrug resistance efflux pump {ECO:0000313|EMBL:AGH48216.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
scnpilot_solids1_trim150_scaffold_82_5
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4574..8272
DNA (3699bp) protein (1233aa)
Fumarylacetoacetase {ECO:0000313|EMBL:CDS50938.1}; EC=3.7.1.2 {ECO:0000313|EMBL:CDS50938.1};; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
fumarylacetoacetate hydrolase (EC:3.7.1.2); K01555 fumarylacetoacetase [EC:3.7.1.2] rbh
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002EF96DA rbh
scnpilot_solids1_trim150_scaffold_82_6
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8287..8928
DNA (642bp) protein (214aa)
maleylacetoacetate isomerase; K01800 maleylacetoacetate isomerase [EC:5.2.1.2] rbh
Maleylacetoacetate isomerase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KWS9_9BURK rbh
Maleylacetoacetate isomerase {ECO:0000313|EMBL:EGI75716.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
scnpilot_solids1_trim150_scaffold_82_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8929..9630)
DNA (702bp) protein (234aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=2 Tax=Alicycliphilus denitrificans RepID=E8TY79_ALIDB rbh
had-superfamily hydrolase, subfamily ia, variant 3; K07025 putative hydrolase of the HAD superfamily rbh
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:AEB84493.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_solids1_trim150_scaffold_82_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9663..10661
DNA (999bp) protein (333aa)
ferrochelatase (EC:4.99.1.1); K01772 ferrochelatase [EC:4.99.1.1]
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Ferrochelatase n=2 Tax=Alicycliphilus denitrificans RepID=E8TY78_ALIDB
scnpilot_solids1_trim150_scaffold_82_trna_1
unknown

Not on your lists

comp(10760..10833)
DNA (74bp)
transferRNA Pro
scnpilot_solids1_trim150_scaffold_82_9
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10886..11131)
DNA (246bp) protein (82aa)
Translation initiation factor IF-1 n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QD10_ACIAP
translation initiation factor IF-1; K02518 translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_solids1_trim150_scaffold_82_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11324..12124
DNA (801bp) protein (267aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00662, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00662, ECO:0000256|SAAS:SAAS00093350};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
psd; phosphatidylserine decarboxylase (EC:4.1.1.65); K01613 phosphatidylserine decarboxylase [EC:4.1.1.65] rbh
phosphatidylserine decarboxylase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003621BFC rbh
scnpilot_solids1_trim150_scaffold_82_11
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12106..12387)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MAC1_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM33493.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_82_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12505..13836)
DNA (1332bp) protein (444aa)
isocitrate lyase; K01637 isocitrate lyase [EC:4.1.3.1] rbh
isocitrate lyase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003657170 rbh
Isocitrate lyase {ECO:0000313|EMBL:GAD24117.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_solids1_trim150_scaffold_82_13
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14162..15106
DNA (945bp) protein (315aa)
2-dehydropantoate 2-reductase; K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169]
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
2-dehydropantoate 2-reductase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCZ0_ACIET
scnpilot_solids1_trim150_scaffold_82_14
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15337..15642
DNA (306bp) protein (102aa)
transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000361EE93
Transcriptional regulator {ECO:0000313|EMBL:EXU79211.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
putative transcriptional regulator
scnpilot_solids1_trim150_scaffold_82_15
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15674..16030
DNA (357bp) protein (119aa)
peptidylprolyl isomerase (EC:5.2.1.8); K03772 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Peptidyl-prolyl cis-trans isomerase n=2 Tax=Acidovorax RepID=A1WAJ6_ACISJ
scnpilot_solids1_trim150_scaffold_82_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16020..18083)
DNA (2064bp) protein (688aa)
Putative sodium symporter protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G3Z4_ALIDK rbh
Putative sodium symporter protein {ECO:0000313|EMBL:AEB84055.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
putative sodium symporter protein; K14393 cation/acetate symporter rbh
scnpilot_solids1_trim150_scaffold_82_17
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18076..18396)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MC97_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM33802.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_82_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18418..20808)
DNA (2391bp) protein (797aa)
Phosphoenolpyruvate synthase {ECO:0000256|PIRNR:PIRNR000854}; Short=PEP synthase {ECO:0000256|PIRNR:PIRNR000854};; EC=2.7.9.2 {ECO:0000256|PIRNR:PIRNR000854};; Pyruvate, water dikinase {ECO:0000256|PIRNR:PIRNR000854}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
phosphoenolpyruvate synthase (EC:2.7.9.2); K01007 pyruvate, water dikinase [EC:2.7.9.2] rbh
phosphoenolpyruvate synthase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000366D938 rbh
scnpilot_solids1_trim150_scaffold_82_19
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20944..21792
DNA (849bp) protein (283aa)
PEP synthetase regulatory protein id=12552324 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
PEP synthetase regulatory protein rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_solids1_trim150_scaffold_82_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21871..22605
DNA (735bp) protein (245aa)
LuxR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003721B48
Variovorax paradoxus strain MEDvA23 contig_136, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16136.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
two component LuxR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_82_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22629..24452
DNA (1824bp) protein (608aa)
Integral membrane sensor hybrid histidine kinase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVN9_VARPE rbh
integral membrane sensor hybrid histidine kinase rbh
Integral membrane sensor hybrid histidine kinase {ECO:0000313|EMBL:ADU35272.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
scnpilot_solids1_trim150_scaffold_82_22

Not on your lists

comp(24716..24964)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=uncultured bacterium A1Q1_fos_1134 RepID=L7W1X4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AGC72615.1}; TaxID=1256543 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_1134.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_82_23
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25057..25998)
DNA (942bp) protein (314aa)
patatin n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003692107 rbh
Predicted esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:GAD24128.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
patatin; K07001 NTE family protein rbh
scnpilot_solids1_trim150_scaffold_82_24
unknown

Not on your lists

comp(26183..26620)
DNA (438bp) protein (146aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_82_25
unknown

Not on your lists

comp(26681..26827)
DNA (147bp) protein (49aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_82_26
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26931..28967)
DNA (2037bp) protein (679aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
NAD-dependent DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] rbh
NAD-dependent DNA ligase LigA n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000372DE29 rbh
scnpilot_solids1_trim150_scaffold_82_27
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29033..30139)
DNA (1107bp) protein (369aa)
cell dividion protein FtsZ n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D0538 rbh
ZipA FtsZ-binding region {ECO:0000313|EMBL:GAD24132.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
zipa ftsz-binding region rbh
scnpilot_solids1_trim150_scaffold_82_28
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30161..33670)
DNA (3510bp) protein (1170aa)
Chromosome partition protein Smc n=2 Tax=Alicycliphilus denitrificans RepID=E8U148_ALIDB rbh
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
chromosome segregation protein smc; K03529 chromosome segregation protein rbh
scnpilot_solids1_trim150_scaffold_82_29
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33814..36819)
DNA (3006bp) protein (1002aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(S) n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIV9_ACIET
PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(S) {ECO:0000313|EMBL:ACM33125.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Displaying items 1-30 of 113 in total

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