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scnpilot_solids1_trim150_scaffold_26

Search features with annotation key words

Displaying items 1-30 of 199 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_26_1
unknown

Not on your lists

2..97
DNA (96bp) protein (32aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_26_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

190..1836
DNA (1647bp) protein (549aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002FDCECA rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:CDM24685.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
methyl-accepting chemotaxis domain-containing protein; K03406 methyl-accepting chemotaxis protein
scnpilot_solids1_trim150_scaffold_26_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1833..2963)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NU47_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30980.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_26_4
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3465..4211
DNA (747bp) protein (249aa)
Peptide chain release factor 2 n=1 Tax=Achromobacter piechaudii HLE RepID=J4YEW0_9BURK rbh
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Peptide chain release factor 2; programmed frameshift-containing rbh
scnpilot_solids1_trim150_scaffold_26_5
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4277..5794
DNA (1518bp) protein (506aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] rbh
Lysine--tRNA ligase n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0JH77_ALCFA rbh
scnpilot_solids1_trim150_scaffold_26_6
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5867..6190)
DNA (324bp) protein (108aa)
Iron-sulfur cluster assembly protein n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7TA53_ALCXX
Iron binding protein IscA {ECO:0000313|EMBL:CDM24689.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein; K13628 iron-sulfur cluster assembly protein
scnpilot_solids1_trim150_scaffold_26_7
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6219..6605)
DNA (387bp) protein (129aa)
Iron-sulfur cluster assembly scaffold protein IscU n=2 Tax=Taylorella asinigenitalis RepID=G4QAZ1_TAYAM
FeS cluster assembly scaffold IscU {ECO:0000313|EMBL:CDM24690.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Fe-S cluster assembly scaffold iscu
scnpilot_solids1_trim150_scaffold_26_8
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6605..7825)
DNA (1221bp) protein (407aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
cysteine desulfurase; K04487 cysteine desulfurase [EC:2.8.1.7] rbh
Cysteine desulfurase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GPE9_PUSST rbh
scnpilot_solids1_trim150_scaffold_26_9
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7846..8361)
DNA (516bp) protein (172aa)
Putative DNA-binding protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2L241_BORA1
Iron-sulfur cluster regulator IscR {ECO:0000313|EMBL:CDM24692.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
DNA-binding protein; K13643 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
scnpilot_solids1_trim150_scaffold_26_10
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8614..9102)
DNA (489bp) protein (163aa)
Low molecular weight protein-tyrosine-phosphatase {ECO:0000313|EMBL:CCJ49485.1}; EC=3.1.3.48 {ECO:0000313|EMBL:CCJ49485.1};; TaxID=1208660 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain Bpp5).;"
Low molecular weight protein-tyrosine-phosphatase n=4 Tax=Bordetella RepID=K0MI20_BORPB
ptpA; low molecular weight protein-tyrosine-phosphatase
scnpilot_solids1_trim150_scaffold_26_11
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9234..11318)
DNA (2085bp) protein (695aa)
UvrABC system protein B n=6 Tax=Bordetella bronchiseptica RepID=UVRB_BORBR rbh
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
uvrB; excinuclease ABC subunit B rbh
scnpilot_solids1_trim150_scaffold_26_12
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11413..12618
DNA (1206bp) protein (402aa)
Aromatic-amino-acid aminotransferase {ECO:0000313|EMBL:CDM24696.1}; EC=2.6.1.57 {ECO:0000313|EMBL:CDM24696.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
tyrB; aromatic amino acid aminotransferase (EC:2.6.1.57); K00832 aromatic-amino-acid transaminase [EC:2.6.1.57] rbh
Aromatic-amino-acid aminotransferase n=1 Tax=Bordetella bronchiseptica 1289 RepID=K4U3X7_BORBO rbh
scnpilot_solids1_trim150_scaffold_26_13
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12821..13540
DNA (720bp) protein (240aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
LexA repressor; K01356 repressor LexA [EC:3.4.21.88]
LexA repressor n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GPE4_PUSST
scnpilot_solids1_trim150_scaffold_26_14
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13776..16235)
DNA (2460bp) protein (820aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein; K01338 ATP-dependent Lon protease [EC:3.4.21.53] rbh
Lon protease n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GPD9_PUSST rbh
scnpilot_solids1_trim150_scaffold_26_15
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16393..17688)
DNA (1296bp) protein (432aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GPD8_PUSST rbh
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ATP-dependent protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX rbh
scnpilot_solids1_trim150_scaffold_26_16
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17702..18361)
DNA (660bp) protein (220aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000313|EMBL:CDM24700.1};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ATP-dependent Clp protease proteolytic subunit; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] rbh
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GPD7_PUSST rbh
scnpilot_solids1_trim150_scaffold_26_17
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18361..19671)
DNA (1311bp) protein (437aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000313|EMBL:CDM24701.1};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
trigger factor n=1 Tax=Pusillimonas noertemannii RepID=UPI0002DF277A rbh
trigger factor; K03545 trigger factor rbh
scnpilot_solids1_trim150_scaffold_26_trna_1
unknown

Not on your lists

19786..19867
DNA (82bp)
transferRNA Leu
scnpilot_solids1_trim150_scaffold_26_18
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19911..20930)
DNA (1020bp) protein (340aa)
LysR family transcriptional regulator n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GV43_PUSST rbh
LysR family transcriptional regulator rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:AEC18685.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
scnpilot_solids1_trim150_scaffold_26_19
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21067..22284
DNA (1218bp) protein (406aa)
HlyD family secretion protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GV44_PUSST rbh
HlyD family secretion protein rbh
HlyD family secretion protein {ECO:0000313|EMBL:AEC18686.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
scnpilot_solids1_trim150_scaffold_26_20
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22293..25499
DNA (3207bp) protein (1069aa)
AcrB/AcrD/AcrF family protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GV45_PUSST rbh
AcrB/AcrD/AcrF family protein {ECO:0000313|EMBL:AEC18687.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
AcrB/AcrD/AcrF family protein rbh
scnpilot_solids1_trim150_scaffold_26_21
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25496..26941
DNA (1446bp) protein (482aa)
Putative outer membrane efflux protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GV46_PUSST rbh
outer membrane efflux protein rbh
Putative outer membrane efflux protein {ECO:0000313|EMBL:AEC18688.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
scnpilot_solids1_trim150_scaffold_26_22
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27249..27458
DNA (210bp) protein (70aa)
Transcriptional regulator, HxlR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4T3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG10636.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids1_trim150_scaffold_26_23
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27703..28452)
DNA (750bp) protein (250aa)
Transcriptional regulator, GntR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12G33_POLSJ
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABE42509.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
scnpilot_solids1_trim150_scaffold_26_24
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28549..29889)
DNA (1341bp) protein (447aa)
Amidase n=1 Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3CC34_STRMB
Amidase {ECO:0000313|EMBL:EMF01546.1}; TaxID=1223523 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mobaraensis NBRC 13819 = DSM 40847.;"
putative amidase
scnpilot_solids1_trim150_scaffold_26_25
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29994..31661)
DNA (1668bp) protein (556aa)
Putative ABC transpoter ATP-binding protein n=1 Tax=Bordetella bronchiseptica 1289 RepID=K4TWI1_BORBO rbh
Putative ABC transpoter ATP-binding protein {ECO:0000313|EMBL:CCN21637.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein rbh
scnpilot_solids1_trim150_scaffold_26_26
Advenella mimigardefordensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31711..32565)
DNA (855bp) protein (285aa)
Binding-protein-dependent transport system inner membrane component family protein 64 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HF69_ACHXA
Putative ABC transporter permease protein {ECO:0000313|EMBL:AHG65120.1}; TaxID=1247726 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella mimigardefordensis DPN7.;"
binding-protein-dependent transporter inner membrane component family protein 64; K02034 peptide/nickel transport system permease protein
scnpilot_solids1_trim150_scaffold_26_27
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32611..33552)
DNA (942bp) protein (314aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Achromobacter piechaudii HLE RepID=J4J919_9BURK rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EJO33409.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
ABC transporter permease; K02033 peptide/nickel transport system permease protein
scnpilot_solids1_trim150_scaffold_26_28
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33562..35160)
DNA (1599bp) protein (533aa)
Extracellular solute-binding protein n=1 Tax=Achromobacter piechaudii HLE RepID=J4QYF6_9BURK rbh
Extracellular solute-binding protein {ECO:0000313|EMBL:EJO33410.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein rbh
scnpilot_solids1_trim150_scaffold_26_29
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35533..35754)
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=C0QIW2_DESAH
Staphylolytic protease preproenzyme LasA {ECO:0000313|EMBL:CDM24928.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
Displaying items 1-30 of 199 in total

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