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scnpilot_solids1_trim150_scaffold_294

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_294_trna_1
unknown

Not on your lists

comp(12..85)
DNA (74bp)
transferRNA Asn
scnpilot_solids1_trim150_scaffold_294_1
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110..580)
DNA (471bp) protein (157aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomo
rRNA large subunit methyltransferase; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] rbh
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5K707_STEMA rbh
scnpilot_solids1_trim150_scaffold_294_2
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(656..1072)
DNA (417bp) protein (139aa)
Ribosomal silencing factor RsfS n=1 Tax=Xanthomonas gardneri ATCC 19865 RepID=F0C421_9XANT
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=69929 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni.;"
iojap family protein; K09710 ribosome-associated protein
scnpilot_solids1_trim150_scaffold_294_3
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1131..1826)
DNA (696bp) protein (232aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" so
nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase; K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KLR6_STEMA
scnpilot_solids1_trim150_scaffold_294_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1838..2881)
DNA (1044bp) protein (348aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] rbh
DNA polymerase III subunit delta n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003154F4C rbh
Stenotrophomonas maltophilia strain ZBG7B contig_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIP87549.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
scnpilot_solids1_trim150_scaffold_294_5
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2924..3472)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00035F29FE
LPS-assembly lipoprotein LptE {ECO:0000256|HAMAP-Rule:MF_01186, ECO:0000256|SAAS:SAAS00074334}; Flags: Precursor;; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative rare lipoprotein B family protein; K03643 LPS-assembly lipoprotein
scnpilot_solids1_trim150_scaffold_294_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3808..6450)
DNA (2643bp) protein (881aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] rbh
Leucine--tRNA ligase n=1 Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7SZE1_STEMA rbh
scnpilot_solids1_trim150_scaffold_294_7
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6669..7952
DNA (1284bp) protein (428aa)
Amidohydrolase {ECO:0000313|EMBL:EYR67281.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
Xaa-Pro dipeptidase family protein id=2482324 bin=GWF1_Xanthomonadales_69_6 species=Microbulbifer agarilyticus genus=Microbulbifer taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Xaa-Pro dipeptidase rbh
scnpilot_solids1_trim150_scaffold_294_8
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7989..8585)
DNA (597bp) protein (199aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003602798
Membrane protein {ECO:0000313|EMBL:AHY58219.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_294_9
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8682..8894)
DNA (213bp) protein (71aa)
Transcriptional regulator, XRE family n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WV75_PSEUU
XRE family transcriptional regulator {ECO:0000313|EMBL:AKC85939.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
XRE family transcriptional regulator; K07729 putative transcriptional regulator
scnpilot_solids1_trim150_scaffold_294_10
unknown

Not on your lists

comp(8891..9319)
DNA (429bp) protein (143aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_294_11
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9483..10340
DNA (858bp) protein (286aa)
Thioredoxin n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0BGG1_9XANT rbh
Thioredoxin {ECO:0000313|EMBL:KHL58886.1}; TaxID=92824 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. cannabis.;"
thioredoxin; K05838 putative thioredoxin rbh
scnpilot_solids1_trim150_scaffold_294_12
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10496..12154
DNA (1659bp) protein (553aa)
Putative peptidoglycan binding protein n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KRA0_STEMA rbh
Peptidoglycan-binding protein LysM {ECO:0000313|EMBL:KDE88449.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
putative peptidoglycan binding protein rbh
scnpilot_solids1_trim150_scaffold_294_13
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12166..13776
DNA (1611bp) protein (537aa)
diguanylate cyclase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D835C6 rbh
Diguanylate cyclase {ECO:0000313|EMBL:AHY58216.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative transmembrane GGDEF transcriptional regulator rbh
scnpilot_solids1_trim150_scaffold_294_14
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13845..14309
DNA (465bp) protein (155aa)
translation elongation factor P (EF-P) n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F9AFDC
Uncharacterized protein {ECO:0000313|EMBL:AHY58215.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_294_15
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14379..15734)
DNA (1356bp) protein (452aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas axonopodis pv. citrumelo F1 RepID=G2LY53_9XANT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHM93602.1}; TaxID=56460 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria.;"
scnpilot_solids1_trim150_scaffold_294_16
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15826..16539
DNA (714bp) protein (238aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000368838A rbh
Membrane protein {ECO:0000313|EMBL:AHY58212.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative transmembrane protein rbh
scnpilot_solids1_trim150_scaffold_294_17
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16716..18590
DNA (1875bp) protein (625aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FE694E rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY58210.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_294_18
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18608..19678
DNA (1071bp) protein (357aa)
Beta-lactamase n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CP81_STEMA rbh
Beta-lactamase {ECO:0000313|EMBL:EZP47299.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
beta-lactamase rbh
scnpilot_solids1_trim150_scaffold_294_19
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19675..20064
DNA (390bp) protein (130aa)
Lactoylglutathione lyase {ECO:0000313|EMBL:CCP12667.1}; EC=4.4.1.5 {ECO:0000313|EMBL:CCP12667.1};; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
Lactoylglutathione lyase n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CQE0_STEMA
hypothetical protein
scnpilot_solids1_trim150_scaffold_294_20
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20183..21076
DNA (894bp) protein (298aa)
ABC transporter ATP-binding protein n=3 Tax=Xanthomonas RepID=D4SVB8_9XANT rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EFF43862.1}; TaxID=427081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122.;"
ABC transporter ATP-binding protein rbh
scnpilot_solids1_trim150_scaffold_294_21
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21088..24666
DNA (3579bp) protein (1193aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EDC267 rbh
putative transmembrane protein rbh
Putative transmembrane protein {ECO:0000313|EMBL:CAQ44740.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
scnpilot_solids1_trim150_scaffold_294_22
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24788..25234
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WU85_PSEUU
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV27805.1}; Flags: Precursor;; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_294_23
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


25360..27453
DNA (2094bp) protein (698aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001329}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
metG; methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] rbh
methionyl-tRNA synthetase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D72997 rbh
scnpilot_solids1_trim150_scaffold_294_24
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27584..28174
DNA (591bp) protein (197aa)
phosphotransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FD1A28 rbh
Phosphotransferase {ECO:0000313|EMBL:AHY58205.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_294_25
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28183..28599
DNA (417bp) protein (139aa)
Ferredoxin II n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3GAM4_STEMA
Uncharacterized protein {ECO:0000313|EMBL:AHY58204.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
ferredoxin; K03616 electron transport complex protein RnfB
scnpilot_solids1_trim150_scaffold_294_26
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28663..29976)
DNA (1314bp) protein (438aa)
cysteine desulfurase (EC:2.8.1.7) rbh
aminotransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F00E92 rbh
Aminotransferase class V {ECO:0000313|EMBL:EZP44543.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
scnpilot_solids1_trim150_scaffold_294_27
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29979..32381)
DNA (2403bp) protein (801aa)
TonB-dependent receptor n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037269FB rbh
TonB-dependent receptor {ECO:0000313|EMBL:CCH14492.1}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
scnpilot_solids1_trim150_scaffold_294_28
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32511..34652)
DNA (2142bp) protein (714aa)
ribosomal RNA large subunit methyltransferase L; K12297 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] rbh
23S rRNA methyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F6E164 rbh
Ribosomal RNA large subunit methyltransferase K/L {ECO:0000256|HAMAP-Rule:MF_01858, ECO:0000256|SAAS:SAAS00183812}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
scnpilot_solids1_trim150_scaffold_294_29
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34778..35305)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EC04F9
Uncharacterized protein {ECO:0000313|EMBL:AHY59630.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
Displaying items 1-30 of 44 in total

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