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scnpilot_solids1_trim150_scaffold_747

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_747_1
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..355
DNA (354bp) protein (118aa)
Regulatory protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L6K1_9GAMM
Regulatory protein {ECO:0000313|EMBL:EZP44114.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
anti sigma-E protein RseA
scnpilot_solids1_trim150_scaffold_747_2
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

480..1997
DNA (1518bp) protein (506aa)
putative subfamily S1C unassigned peptidase; K01362 [EC:3.4.21.-] rbh
peptidase S1 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F1429D rbh
Peptidase S1 {ECO:0000313|EMBL:AHY58153.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
scnpilot_solids1_trim150_scaffold_747_3
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2152..3945
DNA (1794bp) protein (598aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
Elongation factor 4 n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JYY8_STEMA rbh
GTP-binding protein lepA; K03596 GTP-binding protein LepA rbh
scnpilot_solids1_trim150_scaffold_747_4
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3989..4807
DNA (819bp) protein (273aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
lepB; Signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] rbh
Signal peptidase I n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z7C8_XANCT rbh
scnpilot_solids1_trim150_scaffold_747_5
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4835..5203
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A21B88
Membrane protein {ECO:0000313|EMBL:KGE52836.1}; TaxID=325777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. vasculorum.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_747_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5208..5870
DNA (663bp) protein (221aa)
ribonuclease 3 (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] rbh
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
Ribonuclease 3 n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JYY5_STEMA rbh
scnpilot_solids1_trim150_scaffold_747_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5867..6766
DNA (900bp) protein (300aa)
GTPase Era n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KMK4_STEMA rbh
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
GTP-binding protein Era-like-protein; K03595 GTP-binding protein Era rbh
scnpilot_solids1_trim150_scaffold_747_8
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6821..7543
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000308CDD7 rbh
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
recO; DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O) rbh
scnpilot_solids1_trim150_scaffold_747_9
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7568..8284)
DNA (717bp) protein (239aa)
Chemotaxis response regulator protein-glutamate methylesterase n=2 Tax=Stenotrophomonas RepID=M5D2A0_STEMA
Response regulator {ECO:0000313|EMBL:EED38067.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
Response regulator
scnpilot_solids1_trim150_scaffold_747_10
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8361..9746
DNA (1386bp) protein (462aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
23S rRNA (uracil-5-)-methyltransferase RumA; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] rbh
23S rRNA methyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000365455B rbh
scnpilot_solids1_trim150_scaffold_747_11
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9959..10462
DNA (504bp) protein (168aa)
adenylate cyclase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000375071A
CYTH domain protein {ECO:0000313|EMBL:AHY58163.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
adenylate cyclase
scnpilot_solids1_trim150_scaffold_747_12
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10489..11184
DNA (696bp) protein (232aa)
polyketide synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F8AE53 rbh
Polyketide synthase {ECO:0000313|EMBL:AHY58164.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
DSBA oxidoreductase rbh
scnpilot_solids1_trim150_scaffold_747_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11239..12246
DNA (1008bp) protein (336aa)
beta-hexosaminidase; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52] rbh
Beta-hexosaminidase {ECO:0000256|HAMAP-Rule:MF_00364, ECO:0000256|SAAS:SAAS00015774}; EC=3.2.1.52 {ECO:0000256|HAMAP-Rule:MF_00364, ECO:0000256|SAAS:SAAS00114579};; Beta-N-acetylhexosaminidase {ECO:0000256|HAMAP-Rule:MF_00364}; N-acetyl-beta-glucosaminidase {ECO:0000256|HAMAP-Rule:MF_00364}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
Beta-hexosaminidase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JYX8_STEMA rbh
scnpilot_solids1_trim150_scaffold_747_14
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12246..12797
DNA (552bp) protein (184aa)
hpt; Hypoxanthine-guanine phosphoribosyltransferase (EC:2.4.2.8); K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] rbh
Hypoxanthine phosphoribosyltransferase n=2 Tax=Stenotrophomonas maltophilia RepID=J7VPS4_STEMA rbh
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EJP80299.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
scnpilot_solids1_trim150_scaffold_747_15
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13029..13775
DNA (747bp) protein (249aa)
5'-methylthioadenosine phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] rbh
Probable S-methyl-5'-thioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.44 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; Purine nucleoside phosphorylase; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
Probable S-methyl-5'-thioinosine phosphorylase n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SRK1_STRM5 rbh
scnpilot_solids1_trim150_scaffold_747_16
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13866..14072
DNA (207bp) protein (69aa)
Cold shock protein n=22 Tax=Xanthomonas RepID=Q5H1P7_XANOR
scoF; cold shock protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold-shock protein {ECO:0000313|EMBL:KHM92339.1}; TaxID=56460 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria.;"
scnpilot_solids1_trim150_scaffold_747_17
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14145..15374
DNA (1230bp) protein (410aa)
Oxidoreductase n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7GAZ2_XANCT rbh
Oxidoreductase {ECO:0000313|EMBL:ELQ02447.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
2-polyprenyl-6-methoxyphenol hydroxylase rbh
scnpilot_solids1_trim150_scaffold_747_18
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15463..17106
DNA (1644bp) protein (548aa)
acyl-CoA dehydrogenase n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00037D2F28 rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AJC45454.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
acyl-CoA dehydrogenase domain-containing protein; K09456 putative acyl-CoA dehydrogenase rbh
scnpilot_solids1_trim150_scaffold_747_19
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17222..17617)
DNA (396bp) protein (132aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003056ACD
Stenotrophomonas maltophilia strain ZBG7B contig_25, whole genome shotgun sequence {ECO:0000313|EMBL:KIP86632.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
putative outer membrane lipoprotein
scnpilot_solids1_trim150_scaffold_747_20
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17861..18202)
DNA (342bp) protein (114aa)
Uncharacterized protein n=3 Tax=Stenotrophomonas maltophilia RepID=J7VV99_STEMA
putative outer membrane lipoprotein
Putative outer membrane lipoprotein {ECO:0000313|EMBL:CAQ46948.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
scnpilot_solids1_trim150_scaffold_747_21
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18325..19500)
DNA (1176bp) protein (392aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] rbh
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ADV27479.1}; EC=2.3.1.9 {ECO:0000313|EMBL:ADV27479.1};; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
acetyl-CoA acetyltransferase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003067C7B rbh
scnpilot_solids1_trim150_scaffold_747_22
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19685..22516
DNA (2832bp) protein (944aa)
peptidase S8 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000362A4E8 rbh
Serine protease {ECO:0000313|EMBL:AHY58179.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
autotransporter-associated beta strand repeat-containing protein rbh
Displaying 22 items

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