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scnpilot_solids1_trim150_scaffold_5389

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_5389_1
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..1388)
DNA (1386bp) protein (462aa)
Candidate histidine kinase, classic n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5A7_RAMTT
Putative Candidate histidine kinase, classic {ECO:0000313|EMBL:CDI02993.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
histidine kinase
scnpilot_solids1_trim150_scaffold_5389_2
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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1431..2120
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037DD4BF
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:CDI02995.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
two component transcriptional regulator, LuxR family
scnpilot_solids1_trim150_scaffold_5389_3
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2131..2946)
DNA (816bp) protein (272aa)
3-hydroxybutyrate dehydrogenase; K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:ADX47556.1}; EC=1.1.1.30 {ECO:0000313|EMBL:ADX47556.1};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
3-hydroxybutyrate dehydrogenase n=1 Tax=Rudaea cellulosilytica RepID=UPI0003641CCD
scnpilot_solids1_trim150_scaffold_5389_4
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3020..4174)
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3KAL0_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:EBA05774.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
patatin; K07001 NTE family protein
scnpilot_solids1_trim150_scaffold_5389_5
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4196..4549)
DNA (354bp) protein (118aa)
Exported protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IP13_HERSS
hypothetical protein
Exported protein {ECO:0000313|EMBL:ADJ62833.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
scnpilot_solids1_trim150_scaffold_5389_6
unknown

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4864..5196
DNA (333bp) protein (111aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_5389_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5278..5706)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00035E06EB
Variovorax paradoxus strain MEDvA23 contig_33, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31420.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_5389_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5748..6317
DNA (570bp) protein (190aa)
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Dihydroxy-acid dehydratase n=2 Tax=Alicycliphilus denitrificans RepID=E8U062_ALIDB
scnpilot_solids1_trim150_scaffold_5389_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6314..7387
DNA (1074bp) protein (358aa)
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Dihydroxy-acid dehydratase n=2 Tax=Alicycliphilus denitrificans RepID=E8U062_ALIDB
scnpilot_solids1_trim150_scaffold_5389_10
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7404..7646)
DNA (243bp) protein (81aa)
Uncharacterized protein n=2 Tax=Acidovorax RepID=A1W4Y0_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM32464.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_5389_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7756..8067
DNA (312bp) protein (104aa)
Cytochrome c class I n=2 Tax=Alicycliphilus denitrificans RepID=E8U0L2_ALIDB
cytochrome c class i
Cytochrome c-551 {ECO:0000313|EMBL:GAO21211.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_solids1_trim150_scaffold_5389_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8270..9571
DNA (1302bp) protein (434aa)
Cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] rbh
cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036621C7 rbh
Cyclopropane fatty acid synthase {ECO:0000313|EMBL:GAD22932.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_solids1_trim150_scaffold_5389_13
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9568..10149
DNA (582bp) protein (194aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
Hypothetical conserved protein n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0IWV6_COMT2
hypothetical protein
scnpilot_solids1_trim150_scaffold_5389_14
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10202..10411)
DNA (210bp) protein (70aa)
ABC transporter n=1 Tax=Bordetella sp. FB-8 RepID=UPI0003633066
branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
Putative branched-chain amino acid ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CAP44845.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Displaying 14 items

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