ggKbase home page

scnpilot_solids1_trim150_scaffold_2679

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2679_1

Not on your lists

comp(157..882)
DNA (726bp) protein (242aa)
UPI0003D598E3 related cluster n=1 Tax=unknown RepID=UPI0003D598E3 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN41582.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
carboxymuconolactone decarboxylase
scnpilot_solids1_trim150_scaffold_2679_2
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

1166..1657
DNA (492bp) protein (164aa)
Transcriptional regulator, TetR family n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZ55_RUBXD
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABG03323.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
scnpilot_solids1_trim150_scaffold_2679_3
unknown

Not on your lists

comp(1654..1815)
DNA (162bp) protein (54aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2679_4
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1812..2336)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI00037F5C11
Flavin reductase-like protein {ECO:0000313|EMBL:KFG88524.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2679_5
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(2333..3556)
DNA (1224bp) protein (408aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] rbh
Riboflavin biosynthesis protein RibBA n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F4I1_CONWI rbh
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
scnpilot_solids1_trim150_scaffold_2679_6
unknown

Not on your lists

comp(3553..3768)
DNA (216bp) protein (72aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2679_7
Kineosphaera limosa, Kineosphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3964..4200
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI0003822C47
Uncharacterized protein {ECO:0000313|EMBL:GAB94999.1}; TaxID=1184609 species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Kineosphaera.;" source="Kineosphaera limosa NBRC 100340.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2679_8
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4265..4609
DNA (345bp) protein (115aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
Carboxymuconolactone decarboxylase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BLQ1_9GAMM
alkylhydroperoxidase AhpD family
scnpilot_solids1_trim150_scaffold_2679_9
unknown

Not on your lists

4675..4818
DNA (144bp) protein (48aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2679_10
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(4847..5827)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Patulibacter medicamentivorans RepID=H0E5C6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EHN11121.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
scnpilot_solids1_trim150_scaffold_2679_11
Nocardioidaceae bacterium Broad-1, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5952..6872
DNA (921bp) protein (307aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=408672 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae.;" source="Nocardioidaceae bacterium Broad-1.;"
Methylenetetrahydrofolate reductase n=1 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9UTY2_9ACTO rbh
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_2679_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(6939..7826)
DNA (888bp) protein (296aa)
pyridoxine biosynthesis protein; K06215 pyridoxine biosynthesis protein [EC:4.-.-.-] rbh
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Pyridoxal biosynthesis lyase PdxS n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FDW3_CONWI rbh
Displaying 12 items

View Taxonomy