ggKbase home page

scnpilot_solids1_trim150_scaffold_609

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_609_1
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(3..1337)
DNA (1335bp) protein (445aa)
ABC transporter related protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1R8_CONWI rbh
ABC transporter rbh
ABC transporter related protein {ECO:0000313|EMBL:ADB54099.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
scnpilot_solids1_trim150_scaffold_609_trna_1
unknown

Not on your lists

1525..1620
DNA (96bp)
transferRNA Glu
scnpilot_solids1_trim150_scaffold_609_2
unknown

Not on your lists

2470..2748
DNA (279bp) protein (93aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_609_3

Not on your lists

2754..3071
DNA (318bp) protein (106aa)
Subunit S of type I restriction-modification system n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YQ30_LYNSP
Uncharacterized protein {ECO:0000313|EMBL:KKL04559.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
XRE family transcriptional regulator
scnpilot_solids1_trim150_scaffold_609_4
unknown

Not on your lists

3068..3682
DNA (615bp) protein (205aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_609_5
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

Not on your lists

3679..4857
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5RJ14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ34776.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
tyrosine recombinase XerC subunit; K03733 integrase/recombinase XerC
scnpilot_solids1_trim150_scaffold_609_6
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5036..5320
DNA (285bp) protein (95aa)
Tax=GWD2_Deltaproteobacteria_55_8_curated
scnpilot_solids1_trim150_scaffold_609_7
unknown

Not on your lists

5317..5778
DNA (462bp) protein (154aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_609_8
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5778..7655
DNA (1878bp) protein (626aa)
Tetratricopeptide TPR_1 repeat-containing protein id=4156274 bin=GWF2_Bacteroidetes_33_38 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
hypothetical protein
Tax=GWF2_Bacteroidetes_33_38_curated
scnpilot_solids1_trim150_scaffold_609_9

Not on your lists

comp(7924..8181)
DNA (258bp) protein (86aa)
Marine sediment metagenome DNA, contig: S12H4_S22421 {ECO:0000313|EMBL:GAJ20753.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
scnpilot_solids1_trim150_scaffold_609_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8836..9981
DNA (1146bp) protein (382aa)
Cytosine-specific methyltransferase {ECO:0000313|EMBL:EZP67430.1}; EC=2.1.1.37 {ECO:0000313|EMBL:EZP67430.1};; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
C-5 cytosine-specific family DNA methylase; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]
DNA cytosine-5-methyltransferase PliMCI n=1 Tax=Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535 RepID=D4T1H9_9XANT rbh
scnpilot_solids1_trim150_scaffold_609_11
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9978..11051
DNA (1074bp) protein (358aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
C-5 cytosine-specific family DNA methylase; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] rbh
Cytosine-specific methyltransferase n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7H760_XANCT rbh
scnpilot_solids1_trim150_scaffold_609_12
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11054..12394
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P4D1_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:CDZ23927.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_609_13
Propionibacterium freudenreichii, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12375..13094)
DNA (720bp) protein (240aa)
naeIV; very short patch repair endonuclease NaeI (EC:3.1.-.-); K07458 DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
NaeI very short patch repair endonuclease (V.NaeI) {ECO:0000313|EMBL:CEI32466.1}; EC=3.1.-.- {ECO:0000313|EMBL:CEI32466.1};; TaxID=1744 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium freudenreichii.;"
NaeI very short patch repair endonuclease (V.NaeI) n=1 Tax=Propionibacterium freudenreichii subsp. shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1) RepID=D7GI73_PROFC
scnpilot_solids1_trim150_scaffold_609_14
unknown

Not on your lists

13344..13730
DNA (387bp) protein (129aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_609_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13767..15107)
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Burkholderia terrae BS001 RepID=I5CGS8_9BURK rbh
adenylyl cyclase rbh
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
scnpilot_solids1_trim150_scaffold_609_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15120..16184)
DNA (1065bp) protein (355aa)
SAM-dependent methyltransferase PhcB n=1 Tax=Rhizobium leguminosarum RepID=UPI00037D494E rbh
CRP/FNR family transcriptional regulator, anaerobic regulatory protein {ECO:0000313|EMBL:KFC70964.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative methyltransferase rbh
scnpilot_solids1_trim150_scaffold_609_17
Mycobacterium tuberculosis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16207..16845
DNA (639bp) protein (213aa)
Uncharacterized protein n=2 Tax=Mycobacterium avium RepID=T2GRC0_MYCAV
Uncharacterized protein {ECO:0000313|EMBL:KBZ63775.1}; TaxID=1324261 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium tuberculosis TKK-01-0051.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_609_18
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

16974..19124
DNA (2151bp) protein (717aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE80_CONWI rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADB53572.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
scnpilot_solids1_trim150_scaffold_609_19
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(19137..21059)
DNA (1923bp) protein (641aa)
Beta-lactamase domain protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FE79_CONWI rbh
beta-lactamase rbh
Beta-lactamase domain protein {ECO:0000313|EMBL:ADB53571.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
scnpilot_solids1_trim150_scaffold_609_20
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

21125..21478
DNA (354bp) protein (118aa)
membrane protein n=1 Tax=Patulibacter americanus RepID=UPI0003B499C6
hypothetical protein; K00389 putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:ADB50123.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
scnpilot_solids1_trim150_scaffold_609_21
unknown

Not on your lists

comp(21641..22225)
DNA (585bp) protein (195aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_609_22
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(22592..23446)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADN3_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH40610.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
scnpilot_solids1_trim150_scaffold_609_23
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23443..24006)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADN2_GEMAT
hypothetical protein
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
scnpilot_solids1_trim150_scaffold_609_24
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24135..25070)
DNA (936bp) protein (312aa)
Homocysteine S-methyltransferase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8X6_STAND
homocysteine S-methyltransferase
Homocysteine S-methyltransferase {ECO:0000313|EMBL:ADH88681.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids1_trim150_scaffold_609_25
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(25137..25808)
DNA (672bp) protein (224aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6W797_KINRD
LuxR family two component transcriptional regulator
Tax=RBG_16_Actinobacteria_68_12_curated
scnpilot_solids1_trim150_scaffold_609_26
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25805..26761)
DNA (957bp) protein (319aa)
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI0003709B9C
Uncharacterized protein {ECO:0000313|EMBL:KIH98949.1}; TaxID=183763 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
Displaying 27 items

View Taxonomy