ggKbase home page

scnpilot_solids1_trim150_scaffold_236

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_236_1
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..433
DNA (432bp) protein (144aa)
putative (2R)-phospho-3-sulfolactate synthase (ComA) (EC:4.4.1.19)
Putative (2R)-phospho-3-sulfolactate synthase (ComA) {ECO:0000313|EMBL:CCO60330.1}; EC=4.4.1.19 {ECO:0000313|EMBL:CCO60330.1};; TaxID=28173 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchritudo.;"
(2R)-phospho-3-sulfolactate synthase ComA n=1 Tax=Vibrio nigripulchritudo ATCC 27043 RepID=F9TK08_9VIBR
scnpilot_solids1_trim150_scaffold_236_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

519..845
DNA (327bp) protein (109aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Alkylhydroperoxidase like protein, AhpD family n=3 Tax=Rhodanobacter RepID=G4FVM8_9GAMM id=719603 bin=RAAC39 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RAAC39 organism_group=Ignavibacteria
alkylhydroperoxidase
scnpilot_solids1_trim150_scaffold_236_3
Ancylostoma ceylanicum, Ancylostoma, Rhabditida, Chromadorea, Nematoda, Metazoa

Not on your lists

comp(944..1705)
DNA (762bp) protein (254aa)
Putative RNA methylase n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YTB3_AEQSU
Methyltransferase domain protein {ECO:0000313|EMBL:EPB65864.1}; TaxID=53326 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma.;" source="Ancylostoma ceylanicum.;"
putative RNA methylase
scnpilot_solids1_trim150_scaffold_236_4
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1832..3031)
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035EBD00
Uncharacterized protein {ECO:0000313|EMBL:KIC89755.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_236_5
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2986..4617)
DNA (1632bp) protein (544aa)
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GPQ0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIC89755.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_236_6
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4796..7906
DNA (3111bp) protein (1037aa)
Putative uncharacterized protein id=4428121 bin=GWA2_Bacteroidetes_42_15 species=Dysgonomonas mossii genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
TonB-linked outer membrane protein, SusC/RagA family
Tax=GWE2_Bacteroidetes_42_39_curated
scnpilot_solids1_trim150_scaffold_236_7
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7977..9497
DNA (1521bp) protein (507aa)
Putative uncharacterized protein id=1904200 bin=GWE2_Bacteroidetes_42_39 species=Dysgonomonas mossii genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
Tax=GWE2_Bacteroidetes_42_39_curated
scnpilot_solids1_trim150_scaffold_236_8
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9585..11108
DNA (1524bp) protein (508aa)
Licheninase (EC:3.2.1.73)
Licheninase {ECO:0000313|EMBL:AEI51225.1}; EC=3.2.1.73 {ECO:0000313|EMBL:AEI51225.1};; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
Glucan endo-1,3-beta-D-glucosidase n=1 Tax=Niabella soli DSM 19437 RepID=H1NUH3_9SPHI
scnpilot_solids1_trim150_scaffold_236_trna_2
unknown

Not on your lists

comp(11271..11343)
DNA (73bp)
transferRNA Lys
scnpilot_solids1_trim150_scaffold_236_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11506..12306
DNA (801bp) protein (267aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AEV99245.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AEV99245.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000371B5E7
3-oxoacyl-(acyl-carrier-protein) reductase
scnpilot_solids1_trim150_scaffold_236_10
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12376..13197
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037E0832
Uncharacterized protein {ECO:0000313|EMBL:KIC91723.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein; K09134 hypothetical protein
scnpilot_solids1_trim150_scaffold_236_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

13237..14073
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000367289D
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_236_12
unknown

Not on your lists

14118..14651
DNA (534bp) protein (178aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_236_13
unknown

Not on your lists

14722..14922
DNA (201bp) protein (67aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_236_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15054..15911)
DNA (858bp) protein (286aa)
RNA polymerase sigma factor rpoD n=1 Tax=Segetibacter koreensis RepID=UPI000375E1C3
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor
RNA polymerase sigma factor rpoD {ECO:0000313|EMBL:KIC94940.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
scnpilot_solids1_trim150_scaffold_236_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16303..17271
DNA (969bp) protein (323aa)
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003600108
Threonine aldolase {ECO:0000313|EMBL:KIC91763.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
scnpilot_solids1_trim150_scaffold_236_16
Chryseobacterium jeonii, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17333..18961
DNA (1629bp) protein (543aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=266749 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium jeonii.;"
glucose-6-phosphate isomerase; K01810 glucose-6-phosphate isomerase [EC:5.3.1.9]
Glucose-6-phosphate isomerase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJ10_NIAKG
scnpilot_solids1_trim150_scaffold_236_17
unknown

Not on your lists

19019..19441
DNA (423bp) protein (141aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_236_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19490..19972)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003626095
PUR-alpha/beta/gamma DNA/RNA-binding protein
PUR-alpha/beta/gamma DNA/RNA-binding protein {ECO:0000313|EMBL:AEV99985.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_236_19
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20103..21953)
DNA (1851bp) protein (617aa)
Xenobiotic-transporting ATPase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPZ2_NIAKG
Putative ABC transporter permease/ATP-binding protein {ECO:0000313|EMBL:GAO44552.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
xenobiotic-transporting ATPase; K06147 ATP-binding cassette, subfamily B, bacterial
scnpilot_solids1_trim150_scaffold_236_20
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22132..22698
DNA (567bp) protein (189aa)
Acetyltransferase n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L1E8_HALH1
Acetyltransferase {ECO:0000313|EMBL:AKD03768.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
acetyltransferase
scnpilot_solids1_trim150_scaffold_236_21
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22753..26004)
DNA (3252bp) protein (1084aa)
RND efflux system, inner membrane transporter CmeB n=1 Tax=uncultured bacterium A1Q1_fos_1093 RepID=L7VZ12_9BACT
Putative RND-type efflux pump membrane protein {ECO:0000313|EMBL:GAO45722.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
scnpilot_solids1_trim150_scaffold_236_22
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26033..27142)
DNA (1110bp) protein (370aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VUK4_DYAFD
Putative RND-type efflux pump membrane fusion protein {ECO:0000313|EMBL:GAO45721.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
RND family efflux transporter MFP subunit; K03585 membrane fusion protein
scnpilot_solids1_trim150_scaffold_236_23
Capnocytophaga granulosa, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27704..29041)
DNA (1338bp) protein (446aa)
OmpA/MotB domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDQ1_NIAKG
OmpA/MotB domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:EPD28782.1}; TaxID=641143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga granulosa ATCC 51502.;"
scnpilot_solids1_trim150_scaffold_236_24
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29106..29525)
DNA (420bp) protein (140aa)
Rare lipoprotein A n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A2B4_METMM
Putative RlpA-like lipoprotein {ECO:0000313|EMBL:GAO43279.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
rare lipoprotein A; K03642 rare lipoprotein A
scnpilot_solids1_trim150_scaffold_236_25
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29551..31233)
DNA (1683bp) protein (561aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PM94_CHIPD
Putative L,D-transpeptidase {ECO:0000313|EMBL:GAO43278.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
ErfK/YbiS/YcfS/YnhG family protein
scnpilot_solids1_trim150_scaffold_236_26
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31259..31768)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQT1_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC93152.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein; K06940
scnpilot_solids1_trim150_scaffold_236_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31857..32762
DNA (906bp) protein (302aa)
Tyrosine recombinase XerC n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQT0_NIAKG
Tyrosine recombinase xerC; K04763 integrase/recombinase XerD
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_236_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32782..33336)
DNA (555bp) protein (185aa)
DSBA oxidoreductase n=1 Tax=Niabella soli DSM 19437 RepID=H1NK62_9SPHI
DSBA oxidoreductase {ECO:0000313|EMBL:AHF16999.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DSBA oxidoreductase
scnpilot_solids1_trim150_scaffold_236_29
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

33584..36424
DNA (2841bp) protein (947aa)
Glycine dehydrogenase (decarboxylating); K00281 glycine dehydrogenase [EC:1.4.4.2]
glycine dehydrogenase n=1 Tax=Segetibacter koreensis RepID=UPI00037A8B13
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying items 1-30 of 68 in total

View Taxonomy