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scnpilot_solids1_trim150_scaffold_4129

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_4129_1
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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1..780
DNA (780bp) protein (260aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
leuB; 3-isopropylmalate dehydrogenase; K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z3V2_AZOL4
scnpilot_solids1_trim150_scaffold_4129_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(792..1760)
DNA (969bp) protein (323aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ89_PARL1 rbh
alcohol dehydrogenase rbh
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ABS62072.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids1_trim150_scaffold_4129_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1757..2527)
DNA (771bp) protein (257aa)
Transcriptional regulator, TetR family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ84_PARL1
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABS62067.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids1_trim150_scaffold_4129_4
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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2578..3003
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI000379C420
Thioesterase family protein domain protein {ECO:0000313|EMBL:CDO60142.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
thioesterase superfamily protein
scnpilot_solids1_trim150_scaffold_4129_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3000..3413
DNA (414bp) protein (138aa)
Thioesterase superfamily protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ80_PARL1
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ABS62063.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids1_trim150_scaffold_4129_6
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3423..4475)
DNA (1053bp) protein (351aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
dihydroorotate dehydrogenase 2 (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] rbh
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FX29_PHAMO rbh
scnpilot_solids1_trim150_scaffold_4129_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4561..5196
DNA (636bp) protein (212aa)
Putative phage repressor n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ75_PARL1
putative phage repressor
Putative phage repressor {ECO:0000313|EMBL:ABS62058.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids1_trim150_scaffold_4129_8
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5209..5586)
DNA (378bp) protein (126aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium PD-2.;"
lysyl-tRNA synthetase (EC:6.1.1.6); K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6]
UPI0003D1C518 related cluster n=1 Tax=unknown RepID=UPI0003D1C518
Displaying 8 items

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