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scnpilot_solids1_trim150_scaffold_1331

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1331_1
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..831
DNA (831bp) protein (277aa)
30S ribosomal protein S1 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WSL7_PSEUU
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
30S ribosomal protein S1; K02945 small subunit ribosomal protein S1
scnpilot_solids1_trim150_scaffold_1331_2
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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909..1211
DNA (303bp) protein (101aa)
Integration host factor subunit beta n=11 Tax=Stenotrophomonas RepID=IHFB_STRM5
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
ihfB; integration host factor subunit beta; K05788 integration host factor subunit beta
scnpilot_solids1_trim150_scaffold_1331_3
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1285..1548
DNA (264bp) protein (88aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000300384F
Uncharacterized protein {ECO:0000313|EMBL:KGQ19002.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1331_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1551..2729
DNA (1179bp) protein (393aa)
Heat shock protein YciM n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3ERM5_STEMA
Lipopolysaccharide assembly protein B {ECO:0000256|HAMAP-Rule:MF_00994}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
heat shock protein YciM
scnpilot_solids1_trim150_scaffold_1331_5
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2716..3702
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000363FC3A
Uncharacterized protein {ECO:0000313|EMBL:KGM57652.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
glycosyl transferase family protein
scnpilot_solids1_trim150_scaffold_1331_6
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3702..5609
DNA (1908bp) protein (636aa)
Sugar epimerase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UP19_PSEUP rbh
Multidrug MFS transporter {ECO:0000313|EMBL:KGM57651.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
sugar epimerase rbh
scnpilot_solids1_trim150_scaffold_1331_7
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5633..6544
DNA (912bp) protein (304aa)
galU; UTP-glucose-1-phosphate uridylyltransferase (EC:2.7.7.9); K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DC2825
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:AKC85448.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
scnpilot_solids1_trim150_scaffold_1331_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6618..7826)
DNA (1209bp) protein (403aa)
acetyl-CoA acetyltransferase; K00632 acetyl-CoA acyltransferase [EC:2.3.1.16]
Acetyl-CoA acyltransferase {ECO:0000313|EMBL:CCP16207.1}; EC=2.3.1.16 {ECO:0000313|EMBL:CCP16207.1};; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
Acetyl-CoA acyltransferase n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5D782_STEMA
scnpilot_solids1_trim150_scaffold_1331_9
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7901..10273)
DNA (2373bp) protein (791aa)
NAD-binding 3-hydroxyacyl-CoA dehydrogenase; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KGM0_STEMA
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EQM82773.1}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
scnpilot_solids1_trim150_scaffold_1331_10
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10295..10921)
DNA (627bp) protein (209aa)
TetR family transcriptional regulator n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031A6F88
Transcriptional regulator TetR family {ECO:0000313|EMBL:KGQ19010.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
TetR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_1331_11
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11146..11571
DNA (426bp) protein (142aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6]
nucleoside diphosphate kinase n=1 Tax=Dyella japonica RepID=UPI00031D9547
scnpilot_solids1_trim150_scaffold_1331_12
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11581..12807
DNA (1227bp) protein (409aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1
hypothetical protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
50S rRNA methyltransferase n=1 Tax=Xanthomonas RepID=UPI00035FBE54
scnpilot_solids1_trim150_scaffold_1331_13
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12797..13606
DNA (810bp) protein (270aa)
Type IV pilus biogenesis/stability protein PilW n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WSM9_PSEUU
Fimbrial protein {ECO:0000313|EMBL:AKC85443.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
type IV pilus biogenesis/stability protein PilW; K02656 type IV pilus assembly protein PilF
scnpilot_solids1_trim150_scaffold_1331_14
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14039..14356
DNA (318bp) protein (106aa)
membrane protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002F8685E
Uncharacterized protein {ECO:0000313|EMBL:EFF47043.1}; TaxID=427082 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535.;"
hypothetical protein; K15539 cytoskeleton protein RodZ
scnpilot_solids1_trim150_scaffold_1331_15
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14428..15072
DNA (645bp) protein (215aa)
membrane protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00037EF73D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBA16087.1}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
scnpilot_solids1_trim150_scaffold_1331_16
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15072..16250
DNA (1179bp) protein (393aa)
PQQ containing lipoprotein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B35E66
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
quinoprotein
scnpilot_solids1_trim150_scaffold_1331_17
Xanthomonas vasicola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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16387..17787
DNA (1401bp) protein (467aa)
GTP-binding protein Der n=1 Tax=Xanthomonas vasicola RepID=UPI0001CC0240
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1094180 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vasicola pv. vasculorum NCPPB 1381.;"
engA, yfgK, yphC; GTP-binding protein EngA; K03977 GTP-binding protein
scnpilot_solids1_trim150_scaffold_1331_18
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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17787..18323
DNA (537bp) protein (179aa)
molybdopterin-guanine dinucleotide biosynthesis protein A; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77]
Molybdenum cofactor guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907}; Short=MoCo guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907};; GTP:molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Mo-MPT guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin-guanine dinucleotide synthase {ECO:0000256
molybdopterin-guanine dinucleotide biosynthesis protein MobA n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00031BA40D
Displaying 18 items

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