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scnpilot_solids1_trim150_scaffold_870

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_870_1
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..244
DNA (243bp) protein (81aa)
DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNL2_9GAMM
scnpilot_solids1_trim150_scaffold_870_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


561..944
DNA (384bp) protein (128aa)
50S ribosomal protein L17 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ40_9GAMM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LSU ribosomal protein L17P
scnpilot_solids1_trim150_scaffold_870_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1121..1624
DNA (504bp) protein (168aa)
Disulfide bond formation protein B n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ39_9GAMM rbh
Disulfide bond formation protein B {ECO:0000256|HAMAP-Rule:MF_00286}; Disulfide oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00286}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
disulfide bond formation protein DsbB
scnpilot_solids1_trim150_scaffold_870_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1654..3036
DNA (1383bp) protein (461aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ38_9GAMM rbh
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:EIL92479.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_870_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3137..3946
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ37_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL92478.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_870_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3955..4233)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ36_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92477.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_870_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4258..5880)
DNA (1623bp) protein (541aa)
Amidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ35_9GAMM rbh
Amidase {ECO:0000313|EMBL:EIL92476.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
scnpilot_solids1_trim150_scaffold_870_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5978..6727
DNA (750bp) protein (250aa)
Cytochrome c class I n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ34_9GAMM rbh
Cytochrome c class I {ECO:0000313|EMBL:EIL92475.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytochrome c553
scnpilot_solids1_trim150_scaffold_870_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6724..8013
DNA (1290bp) protein (430aa)
Cytochrome c, class I n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ33_9GAMM rbh
Cytochrome c, class I {ECO:0000313|EMBL:EIL92474.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytochrome c, mono- and diheme variants family
scnpilot_solids1_trim150_scaffold_870_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8023..8541)
DNA (519bp) protein (173aa)
G:T/U mismatch-specific DNA glycosylase (EC:3.2.2.-)
G:T/U mismatch-specific DNA glycosylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ32_9GAMM rbh
G:T/U mismatch-specific DNA glycosylase {ECO:0000313|EMBL:EIL92473.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_870_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8525..9217)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ31_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL92472.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
PP-loop superfamily ATP-utilizing enzyme
scnpilot_solids1_trim150_scaffold_870_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9283..10836
DNA (1554bp) protein (518aa)
Ribonuclease G n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ30_9GAMM rbh
Ribonuclease G {ECO:0000313|EMBL:EIL92471.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ribonuclease, Rne/Rng family
scnpilot_solids1_trim150_scaffold_870_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10873..14877
DNA (4005bp) protein (1335aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ29_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL92470.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
TIGR02099 family protein
scnpilot_solids1_trim150_scaffold_870_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14893..16095)
DNA (1203bp) protein (401aa)
Fatty acid hydroxylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ28_9GAMM rbh
Fatty acid hydroxylase {ECO:0000313|EMBL:EIL92469.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
fatty acid hydroxylase rbh
scnpilot_solids1_trim150_scaffold_870_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16227..17156
DNA (930bp) protein (310aa)
Putative Zn-dependent protease-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ27_9GAMM
Putative Zn-dependent protease-like protein {ECO:0000313|EMBL:EIL92468.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
microcin-processing peptidase 2
scnpilot_solids1_trim150_scaffold_870_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17225..17665
DNA (441bp) protein (147aa)
Putative Zn-dependent protease-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ27_9GAMM
Putative Zn-dependent protease-like protein {ECO:0000313|EMBL:EIL92468.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
microcin-processing peptidase 2
scnpilot_solids1_trim150_scaffold_870_17
Pseudomonas sp. RIT288, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18156..18932)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2K7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EZP32206.1}; TaxID=1470589 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. RIT288.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_870_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19293..19781)
DNA (489bp) protein (163aa)
Uncharacterized protein (Fragment) n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VQG7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89458.1}; Flags: Fragment;; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
adenine specific DNA methylase Mod
scnpilot_solids1_trim150_scaffold_870_19
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20373..20858)
DNA (486bp) protein (162aa)
id=2850555 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_solids1_trim150_scaffold_870_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20855..21418)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VM67_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL88308.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_870_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21443..21715)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VM68_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88309.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Protein of unknown function (DUF1653)
scnpilot_solids1_trim150_scaffold_870_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21811..23193
DNA (1383bp) protein (461aa)
Putative Zn-dependent protease-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VM69_9GAMM rbh
Putative Zn-dependent protease-like protein {ECO:0000313|EMBL:EIL88310.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
microcin-processing peptidase 1
scnpilot_solids1_trim150_scaffold_870_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23594..23995
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W595_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94636.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_870_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24050..25264)
DNA (1215bp) protein (405aa)
Sodium/glutamate symporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W596_9GAMM rbh
Sodium/glutamate symporter {ECO:0000313|EMBL:EIL94637.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
gltS; sodium/glutamate symport carrier protein; K03312 glutamate:Na+ symporter, ESS family
scnpilot_solids1_trim150_scaffold_870_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25296..26282)
DNA (987bp) protein (329aa)
Mandelate racemase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W597_9GAMM rbh
Mandelate racemase {ECO:0000313|EMBL:EIL94638.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
mandelate racemase
scnpilot_solids1_trim150_scaffold_870_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26267..27310)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W598_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL94639.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_870_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27446..29218)
DNA (1773bp) protein (591aa)
gamma-glutamyltransferase 1 (EC:2.3.2.2)
Gamma-glutamyltranspeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W599_9GAMM rbh
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:EIL94640.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_870_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29407..31890)
DNA (2484bp) protein (828aa)
Outer membrane receptor for ferrienterochelin and colicins n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5A0_9GAMM rbh
Outer membrane receptor for ferrienterochelin and colicins {ECO:0000313|EMBL:EIL94641.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
outer membrane receptor for ferrienterochelin and colicins; K02014 iron complex outermembrane recepter protein
scnpilot_solids1_trim150_scaffold_870_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32251..33153)
DNA (903bp) protein (301aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5A1_9GAMM rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EIL94642.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LysR family transcriptional regulator rbh
scnpilot_solids1_trim150_scaffold_870_30
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33243..34175)
DNA (933bp) protein (311aa)
geranylgeranyl pyrophosphate synthase (EC:2.5.1.10)
Geranyltranstransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5A2_9GAMM rbh
Geranyltranstransferase {ECO:0000313|EMBL:EIL94643.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Displaying items 1-30 of 37 in total

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