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scnpilot_solids1_trim150_scaffold_292

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_292_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..252
DNA (252bp) protein (84aa)
30S ribosomal protein S16 n=1 Tax=Rhodanobacter sp. 115 RepID=I4VQS4_9GAMM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SSU ribosomal protein S16P
scnpilot_solids1_trim150_scaffold_292_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

257..769
DNA (513bp) protein (171aa)
Ribosome maturation factor RimM n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5S9_9GAMM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
16S rRNA processing protein RimM
scnpilot_solids1_trim150_scaffold_292_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

803..1561
DNA (759bp) protein (253aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQC1_9GAMM
tRNA (guanine-N1)-methyltransferase
scnpilot_solids1_trim150_scaffold_292_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1718..2113
DNA (396bp) protein (132aa)
50S ribosomal protein L19 n=1 Tax=Rhodanobacter denitrificans RepID=I4WTL2_9GAMM
ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_292_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2165..4225)
DNA (2061bp) protein (687aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NEH3_9GAMM
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AGG88342.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
scnpilot_solids1_trim150_scaffold_292_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4357..5379)
DNA (1023bp) protein (341aa)
L-lysine 2,3-aminomutase (EC:5.4.3.2)
Lysine-2,3-aminomutase-related protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTL4_9GAMM
Lysine-2,3-aminomutase-related protein {ECO:0000313|EMBL:EIM01666.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_292_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5483..6049
DNA (567bp) protein (189aa)
Elongation factor P n=1 Tax=Rhodanobacter denitrificans RepID=I4WTL5_9GAMM rbh
translation elongation factor P rbh
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_292_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6135..7466
DNA (1332bp) protein (444aa)
Cytosine deaminase-like metal-dependent hydrolase n=1 Tax=Rhodanobacter denitrificans RepID=M4NCE1_9GAMM
cytosine deaminase-like metal-dependent hydrolase
Cytosine deaminase-like metal-dependent hydrolase {ECO:0000313|EMBL:AGG88345.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_292_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7542..8249
DNA (708bp) protein (236aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQC8_9GAMM
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_292_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8246..8932
DNA (687bp) protein (229aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Phosphoglycolate phosphatase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTL9_9GAMM
2-phosphoglycolate phosphatase
scnpilot_solids1_trim150_scaffold_292_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8929..9855
DNA (927bp) protein (309aa)
Phytoene/squalene synthetase n=1 Tax=Rhodanobacter denitrificans RepID=M4NCH8_9GAMM
phytoene/squalene synthetase
Phytoene/squalene synthetase {ECO:0000313|EMBL:AGG88349.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_292_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9925..10851
DNA (927bp) protein (309aa)
GTP cyclohydrolase FolE2 {ECO:0000256|HAMAP-Rule:MF_01527}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_01527};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase FolE2 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5U0_9GAMM
scnpilot_solids1_trim150_scaffold_292_13
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10937..12274)
DNA (1338bp) protein (446aa)
dihydroorotase, multifunctional complex type; K01465 dihydroorotase [EC:3.5.2.3]
dihydroorotase n=1 Tax=Dyella japonica RepID=UPI0002DF1F4E
Dihydroorotase {ECO:0000256|SAAS:SAAS00252556}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_solids1_trim150_scaffold_292_14
unknown

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comp(12610..13443)
DNA (834bp) protein (278aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_292_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13465..13953
DNA (489bp) protein (163aa)
RNA polymerase-binding protein DksA n=2 Tax=Rhodanobacter denitrificans RepID=M4NEI0_9GAMM
RNA polymerase-binding protein DksA
RNA polymerase-binding protein DksA {ECO:0000313|EMBL:AGG88352.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_292_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14004..14486)
DNA (483bp) protein (161aa)
SufE protein probably involved in Fe-S center assembly n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5U3_9GAMM
SufE protein probably involved in Fe-S center assembly {ECO:0000313|EMBL:EIL94834.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SufE protein probably involved in Fe-S center assembly
scnpilot_solids1_trim150_scaffold_292_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14465..15835)
DNA (1371bp) protein (457aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5U4_9GAMM
scnpilot_solids1_trim150_scaffold_292_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16002..16535
DNA (534bp) protein (178aa)
Putative outer membrane lipoprotein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ35_9GAMM
Putative outer membrane lipoprotein {ECO:0000313|EMBL:EIM01577.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative outer membrane lipoprotein
scnpilot_solids1_trim150_scaffold_292_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17024..18034
DNA (1011bp) protein (337aa)
ornithine carbamoyltransferase (EC:2.1.3.9)
Ornithine carbamoyltransferase {ECO:0000313|EMBL:AGG88357.1}; EC=2.1.3.9 {ECO:0000313|EMBL:AGG88357.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
N-acetylornithine carbamoyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTM8_9GAMM
scnpilot_solids1_trim150_scaffold_292_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18064..18690
DNA (627bp) protein (209aa)
Negative transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5U7_9GAMM
Negative transcriptional regulator {ECO:0000313|EMBL:EIL94838.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transcriptional regulator
scnpilot_solids1_trim150_scaffold_292_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18687..19166
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVK8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03500.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative redox protein, regulator of disulfide bond formation
scnpilot_solids1_trim150_scaffold_292_22
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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19196..20389
DNA (1194bp) protein (398aa)
Argininosuccinate synthase {ECO:0000256|SAAS:SAAS00214603}; EC=6.3.4.5 {ECO:0000256|SAAS:SAAS00009947};; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ39_9GAMM
scnpilot_solids1_trim150_scaffold_292_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20386..21534
DNA (1149bp) protein (383aa)
Acetylornithine deacetylase {ECO:0000313|EMBL:EIL88844.1}; EC=3.5.1.16 {ECO:0000313|EMBL:EIL88844.1};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase (EC:3.5.1.-)
Acetylornithine deacetylase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNQ3_9GAMM
scnpilot_solids1_trim150_scaffold_292_24
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21521..22942
DNA (1422bp) protein (474aa)
Acetylglutamate kinase {ECO:0000313|EMBL:EIL88845.1}; EC=2.7.2.8 {ECO:0000313|EMBL:EIL88845.1};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
N-acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNQ4_9GAMM
scnpilot_solids1_trim150_scaffold_292_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22939..23907
DNA (969bp) protein (323aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|SAAS:SAAS00137393}; EC=1.2.1.38 {ECO:0000256|SAAS:SAAS00137393};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5V2_9GAMM
scnpilot_solids1_trim150_scaffold_292_26
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23982..25277
DNA (1296bp) protein (432aa)
Argininosuccinate lyase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVK2_9GAMM
Argininosuccinate lyase {ECO:0000313|EMBL:AIF47503.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
argininosuccinate lyase
scnpilot_solids1_trim150_scaffold_292_27
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25468..25908)
DNA (441bp) protein (147aa)
2-aminomuconate deaminase n=1 Tax=Dyella japonica RepID=UPI0002D376B0
Uncharacterized protein {ECO:0000313|EMBL:KFN50906.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
putative translation initiation inhibitor, yjgF family
scnpilot_solids1_trim150_scaffold_292_28
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26064..26852
DNA (789bp) protein (263aa)
Short-chain dehydrogenase/reductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNA1_9GAMM
Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:EIL88692.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
scnpilot_solids1_trim150_scaffold_292_29
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26929..28377
DNA (1449bp) protein (483aa)
2-aminomuconic semialdehyde dehydrogenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKV5_9GAMM
2-aminomuconic semialdehyde dehydrogenase {ECO:0000313|EMBL:EIM00097.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
NAD-dependent aldehyde dehydrogenase
scnpilot_solids1_trim150_scaffold_292_30
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28491..29003
DNA (513bp) protein (171aa)
3-hydroxyanthranilate 3,4-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; EC=1.13.11.6 {ECO:0000256|HAMAP-Rule:MF_00825};; 3-hydroxyanthranilate oxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; 3-hydroxyanthranilic acid dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
3-hydroxyanthranilate 3,4-dioxygenase (EC:1.13.11.6)
3-hydroxyanthranilate 3,4-dioxygenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLI7_9GAMM
Displaying items 1-30 of 63 in total

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