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scnpilot_solids1_trim150_scaffold_305

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_305_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..569)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NRN2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90206.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_305_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(566..1078)
DNA (513bp) protein (171aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQZ9_9GAMM
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family {ECO:0000313|EMBL:AGG90205.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_305_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1187..2209)
DNA (1023bp) protein (341aa)
Arabinose 5-phosphate isomerase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSE4_9GAMM
KpsF/GutQ family protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_305_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2366..2581
DNA (216bp) protein (72aa)
BolA superfamily transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WQZ7_9GAMM
putative transcriptional regulator, BolA superfamily
Putative transcriptional regulator, BolA superfamily {ECO:0000313|EMBL:AGG90203.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_305_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2619..3878
DNA (1260bp) protein (420aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSE6_9GAMM
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
scnpilot_solids1_trim150_scaffold_305_6
unknown

Not on your lists

3918..4043
DNA (126bp) protein (42aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_305_7
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4188..6281
DNA (2094bp) protein (698aa)
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TTG4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ04941.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_305_8
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6460..7428
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DE15_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU82889.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
MarR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_305_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7523..8233)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4U4_9GAMM
Protein of unknown function (DUF3108)
Uncharacterized protein {ECO:0000313|EMBL:EIL94485.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_305_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8282..8950)
DNA (669bp) protein (223aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylformylglycinamidine synthase, clade II n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKM8_9GAMM
scnpilot_solids1_trim150_scaffold_305_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8969..10021)
DNA (1053bp) protein (351aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4U6_9GAMM
scnpilot_solids1_trim150_scaffold_305_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10160..11143
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQY8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90194.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_305_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11271..12464
DNA (1194bp) protein (398aa)
Putative permease n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKM5_9GAMM
Putative permease {ECO:0000313|EMBL:EIL87766.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative permease
scnpilot_solids1_trim150_scaffold_305_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12461..13219
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4U9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94490.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
regulatory inactivation of DnaA Hda protein
scnpilot_solids1_trim150_scaffold_305_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13237..14139)
DNA (903bp) protein (301aa)
Putative permease, DMT superfamily protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSK0_9GAMM
Putative permease, DMT superfamily protein {ECO:0000313|EMBL:EIL90191.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative permease, DMT superfamily
scnpilot_solids1_trim150_scaffold_305_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14240..15160)
DNA (921bp) protein (307aa)
Putative glycosyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNW8_9GAMM
Putative glycosyltransferase {ECO:0000313|EMBL:EIL88909.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative glycosyltransferase
scnpilot_solids1_trim150_scaffold_305_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15212..15988)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NBE3_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_305_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16010..19873)
DNA (3864bp) protein (1288aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodano
Phosphoribosylformylglycinamidine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEH2_9GAMM
scnpilot_solids1_trim150_scaffold_305_19
unknown

Not on your lists

comp(19953..20204)
DNA (252bp) protein (84aa)
Polypeptide-transport-associated domain-containing protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZA6_9GAMM
scnpilot_solids1_trim150_scaffold_305_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20357..20587)
DNA (231bp) protein (77aa)
Uncharacterized small protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NDH1_9GAMM
uncharacterized small protein
Uncharacterized small protein {ECO:0000313|EMBL:AGG87927.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_305_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20584..22674)
DNA (2091bp) protein (697aa)
Carbon starvation protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSJ5_9GAMM
Carbon starvation protein {ECO:0000313|EMBL:EIL90186.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
carbon starvation protein, predicted membrane protein
scnpilot_solids1_trim150_scaffold_305_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22948..23757
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NBE9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87929.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_305_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23932..24468
DNA (537bp) protein (179aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Peptide deformylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSJ3_9GAMM
peptide deformylase
scnpilot_solids1_trim150_scaffold_305_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24488..25321)
DNA (834bp) protein (278aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSI7_9GAMM
orotidine 5''-phosphate decarboxylase, subfamily 2
scnpilot_solids1_trim150_scaffold_305_25
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25571..27232)
DNA (1662bp) protein (554aa)
ABC transporter ATP-binding protein n=1 Tax=Dyella japonica RepID=UPI0002E45678
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIF49286.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ATP-binding cassette protein, ChvD family
scnpilot_solids1_trim150_scaffold_305_26
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27441..28517)
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002EABDB8 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIF49285.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_305_27
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28655..29923
DNA (1269bp) protein (423aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
serine hydroxymethyltransferase n=1 Tax=Dyella japonica RepID=UPI0002D474FE rbh
glycine/serine hydroxymethyltransferase rbh
scnpilot_solids1_trim150_scaffold_305_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30032..30532
DNA (501bp) protein (167aa)
Transcriptional repressor NrdR n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJA1_9GAMM
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcriptional regulator NrdR
scnpilot_solids1_trim150_scaffold_305_29
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30576..31841
DNA (1266bp) protein (422aa)
putative deaminase; K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Riboflavin biosynthesis protein RibD n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ98_9GAMM
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_305_30
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32248..32889
DNA (642bp) protein (214aa)
riboflavin synthase alpha chain (EC:2.5.1.9)
Riboflavin synthase subunit alpha n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSH9_9GAMM
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:EIL90170.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Displaying items 1-30 of 76 in total

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