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scnpilot_solids1_trim150_scaffold_481

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Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_481_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35..244
DNA (210bp) protein (70aa)
Cold shock protein n=2 Tax=Rhodanobacter RepID=I4WY71_9GAMM
cold shock protein
Cold shock protein {ECO:0000313|EMBL:AGG89746.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_481_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

543..1325
DNA (783bp) protein (261aa)
Dinucleotide-utilizing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUD2_9GAMM
dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_481_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1432..2172)
DNA (741bp) protein (247aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.36 1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AGG89738.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AGG89738.1};; EC=1.1.1.36 {ECO:0000313|EMBL:AGG89738.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WY79_9GAMM
scnpilot_solids1_trim150_scaffold_481_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2425..4296
DNA (1872bp) protein (624aa)
Chaperone protein HtpG n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUD7_9GAMM
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
molecular chaperone of HSP90 family
scnpilot_solids1_trim150_scaffold_481_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4429..5088)
DNA (660bp) protein (220aa)
DSBA oxidoreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTS0_9GAMM
DSBA oxidoreductase {ECO:0000313|EMBL:EIL90611.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative dithiol-disulfide isomerase involved in polyketide biosynthesis
scnpilot_solids1_trim150_scaffold_481_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5110..5730)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3L4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94055.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_481_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5845..7242)
DNA (1398bp) protein (466aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Rhodanobacter denitrificans RepID=M4ND65_9GAMM
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:AGG87792.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_481_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7352..8746)
DNA (1395bp) protein (465aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Rhodanobacter denitrificans RepID=M4ND65_9GAMM
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:AGG87792.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_481_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8978..9553)
DNA (576bp) protein (192aa)
Nicotinamide mononucleotide transporter PnuC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUE6_9GAMM
Nicotinamide mononucleotide transporter PnuC {ECO:0000313|EMBL:EIM03088.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
nicotinamide mononucleotide transporter PnuC
scnpilot_solids1_trim150_scaffold_481_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9555..11771)
DNA (2217bp) protein (739aa)
TonB-dependent siderophore receptor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUE7_9GAMM
TonB-dependent siderophore receptor
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_481_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12021..13157)
DNA (1137bp) protein (379aa)
Aminoglycoside phosphotransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WY93_9GAMM
putative homoserine kinase type II (protein kinase fold)
Putative homoserine kinase type II (Protein kinase fold) {ECO:0000313|EMBL:AGG89723.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_481_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13291..13830
DNA (540bp) protein (180aa)
Response regulator receiver protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W454_9GAMM
Response regulator receiver protein {ECO:0000313|EMBL:EIL94245.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
response regulator containing a CheY-like receiver domain and a GGDEF domain
scnpilot_solids1_trim150_scaffold_481_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13823..14203
DNA (381bp) protein (127aa)
Heat shock protein 15 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W453_9GAMM
Heat shock protein 15 {ECO:0000256|PIRNR:PIRNR016821}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ribosome-associated heat shock protein implicated in recycling of 50S subunit
scnpilot_solids1_trim150_scaffold_481_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14247..16820)
DNA (2574bp) protein (858aa)
DNA mismatch repair protein MutS n=1 Tax=Rhodanobacter denitrificans RepID=I4WY99_9GAMM
DNA mismatch repair protein MutS
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_481_15
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17032..17685)
DNA (654bp) protein (218aa)
Uncharacterized protein {ECO:0000313|EMBL:BAP57241.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Putative uncharacterized protein id=3730467 bin=GWF2_Nitrospirae_44_13 species=Trichodesmium erythraeum genus=Trichodesmium taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
scnpilot_solids1_trim150_scaffold_481_16
Xanthomonas fragariae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17809..19554)
DNA (1746bp) protein (582aa)
Type IV secretion system protein VirD4 n=1 Tax=Xanthomonas fragariae LMG 25863 RepID=R0FKD8_9XANT
Type IV secretion system protein VirD4 {ECO:0000313|EMBL:ENZ93834.1}; TaxID=1131451 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fragariae LMG 25863.;"
virD4; type IV secretion system protein VirD4; K03205 type IV secretion system protein VirD4
scnpilot_solids1_trim150_scaffold_481_17
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19756..20265
DNA (510bp) protein (170aa)
Competence/damage-inducible protein CinA-like protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NQ15_9GAMM
Damage-inducible protein CinA {ECO:0000313|EMBL:KGI77606.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
competence/damage-inducible protein CinA-like protein
scnpilot_solids1_trim150_scaffold_481_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


20409..21449
DNA (1041bp) protein (347aa)
Protein RecA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUG4_9GAMM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
protein RecA
scnpilot_solids1_trim150_scaffold_481_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21651..22154
DNA (504bp) protein (168aa)
Regulatory protein RecX n=1 Tax=Rhodanobacter denitrificans RepID=I4WYA8_9GAMM
hypothetical protein
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_481_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22207..24852
DNA (2646bp) protein (882aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W445_9GAMM
scnpilot_solids1_trim150_scaffold_481_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25110..25364
DNA (255bp) protein (85aa)
Carbon storage regulator homolog n=1 Tax=Rhodanobacter sp. 115 RepID=I4W263_9GAMM
carbon storage regulator CsrA
Carbon storage regulator homolog {ECO:0000256|HAMAP-Rule:MF_00167, ECO:0000256|SAAS:SAAS00093889}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids1_trim150_scaffold_481_trna_1
unknown

Not on your lists

25438..25532
DNA (95bp)
transferRNA Ser
scnpilot_solids1_trim150_scaffold_481_22
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25748..26623
DNA (876bp) protein (292aa)
oxidoreductase n=1 Tax=Methyloferula stellata RepID=UPI00035C0A91 rbh
aldo/keto reductase rbh
Aldo/keto reductase {ECO:0000313|EMBL:ADH90826.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids1_trim150_scaffold_481_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

26826..30044
DNA (3219bp) protein (1073aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IP46_KORVE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
scnpilot_solids1_trim150_scaffold_481_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30233..31924
DNA (1692bp) protein (564aa)
DNA polymerase III, subunit gamma/tau n=1 Tax=Rhodanobacter denitrificans RepID=M4NCZ1_9GAMM rbh
DNA polymerase III, subunit gamma/tau rbh
DNA polymerase III, subunit gamma/tau {ECO:0000313|EMBL:AGG88580.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_481_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31921..32247
DNA (327bp) protein (109aa)
Nucleoid-associated protein UU7_02777 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6F9_9GAMM
Nucleoid-associated protein UU7_02777 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA-binding protein, YbaB/EbfC family
scnpilot_solids1_trim150_scaffold_481_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32330..32929
DNA (600bp) protein (200aa)
Recombination protein RecR n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6G0_9GAMM
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA replication and repair protein RecR
scnpilot_solids1_trim150_scaffold_481_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32933..33277
DNA (345bp) protein (115aa)
HIT family hydrolase, diadenosine tetraphosphate hydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKI3_9GAMM
HIT family hydrolase, diadenosine tetraphosphate hydrolase {ECO:0000313|EMBL:EIL99974.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
HIT family hydrolase, diadenosine tetraphosphate hydrolase
scnpilot_solids1_trim150_scaffold_481_28
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33312..33908)
DNA (597bp) protein (199aa)
Starvation-inducible outer membrane lipoprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VP00_9GAMM
Starvation-inducible outer membrane lipoprotein {ECO:0000313|EMBL:EIL88941.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
starvation-inducible outer membrane lipoprotein
scnpilot_solids1_trim150_scaffold_481_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33950..35923)
DNA (1974bp) protein (658aa)
Transglutaminase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLP6_9GAMM
transglutaminase-like enzyme, predicted cysteine protease
Transglutaminase-like enzyme, predicted cysteine protease {ECO:0000313|EMBL:AGG88585.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 1-30 of 47 in total

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