ggKbase home page

scnpilot_solids1_trim150_scaffold_567

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_567_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..583
DNA (582bp) protein (194aa)
Metal-dependent hydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WVE5_9GAMM
Metal-dependent hydrolase {ECO:0000313|EMBL:EIM03437.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
metal-dependent hydrolase
scnpilot_solids1_trim150_scaffold_567_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

580..993
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NAE5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87429.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_567_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(910..2523)
DNA (1614bp) protein (538aa)
Exo-beta-1,3-glucanase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDA7_9GAMM
exo-beta-1,3-glucanase
Exo-beta-1,3-glucanase {ECO:0000313|EMBL:AGG87428.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_567_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2679..4706
DNA (2028bp) protein (676aa)
Soluble lytic murein transglycosylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W338_9GAMM
Soluble lytic murein transglycosylase {ECO:0000313|EMBL:EIL93879.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
soluble lytic murein transglycosylase-like protein
scnpilot_solids1_trim150_scaffold_567_5
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4907..5377
DNA (471bp) protein (157aa)
Endoribonuclease L-PSP n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46NS5_CUPPJ
endoribonuclease L-PSP; K07567 TdcF protein
Endoribonuclease L-PSP {ECO:0000313|EMBL:AAZ65209.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
scnpilot_solids1_trim150_scaffold_567_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(5414..6445)
DNA (1032bp) protein (344aa)
alcohol dehydrogenase; K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
Alcohol dehydrogenase GroES domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPA4_9BACT
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:EEF58355.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
scnpilot_solids1_trim150_scaffold_567_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6640..7887
DNA (1248bp) protein (416aa)
Multifunctional CCA protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W341_9GAMM
Multifunctional CCA protein {ECO:0000256|HAMAP-Rule:MF_01261, ECO:0000256|SAAS:SAAS00054545}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
tRNA nucleotidyltransferase/poly(A) polymerase
scnpilot_solids1_trim150_scaffold_567_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7947..10151
DNA (2205bp) protein (735aa)
Phosphoglycerol transferase family protein, alkaline phosphatase superfamily n=1 Tax=Rhodanobacter denitrificans RepID=M4ND94_9GAMM
phosphoglycerol transferase family protein, alkaline phosphatase superfamily
Phosphoglycerol transferase family protein, alkaline phosphatase superfamily {ECO:0000313|EMBL:AGG87413.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_567_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10195..11388)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV03_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03295.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_567_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11453..13627)
DNA (2175bp) protein (725aa)
Outer membrane receptor protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV04_9GAMM
Outer membrane receptor protein {ECO:0000313|EMBL:EIM03296.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_567_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13828..14475
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W346_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93887.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_567_12
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14610..15356
DNA (747bp) protein (249aa)
Pteridine reductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQX1_9GAMM
Pteridine reductase {ECO:0000313|EMBL:KGO99521.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
scnpilot_solids1_trim150_scaffold_567_13
unknown

Not on your lists

comp(15342..15803)
DNA (462bp) protein (154aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_567_14
Agarivorans albus, Agarivorans, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15796..16146)
DNA (351bp) protein (117aa)
Dihydroneopterin aldolase {ECO:0000313|EMBL:GAD03583.1}; EC=4.1.2.25 {ECO:0000313|EMBL:GAD03583.1};; TaxID=1331007 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Agarivorans.;" source="Agarivorans albus MKT 106.;"
dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Dihydroneopterin aldolase n=1 Tax=Agarivorans albus MKT 106 RepID=R9PQM0_AGAAL
scnpilot_solids1_trim150_scaffold_567_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16246..17640
DNA (1395bp) protein (465aa)
ATP-dependent RNA helicase DbpA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ93_9GAMM
ATP-dependent RNA helicase DbpA {ECO:0000313|EMBL:EIL89384.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
DNA/RNA helicase, superfamily II
scnpilot_solids1_trim150_scaffold_567_16
unknown

Not on your lists

17852..18346
DNA (495bp) protein (165aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_567_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18458..19240
DNA (783bp) protein (261aa)
Mg-dependent DNase (EC:3.1.21.-)
Mg-dependent DNase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPJ3_9GAMM
Mg-dependent DNase {ECO:0000313|EMBL:EIL89134.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_567_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19480..20013)
DNA (534bp) protein (178aa)
pseudouridine synthase family protein (EC:5.4.99.-)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Pseudouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WMS0_9GAMM
scnpilot_solids1_trim150_scaffold_567_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20048..20968)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMS1_9GAMM
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:AGG90790.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_567_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21304..22425)
DNA (1122bp) protein (374aa)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
S-(Hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFC2_9GAMM
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
scnpilot_solids1_trim150_scaffold_567_21
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(22588..23223)
DNA (636bp) protein (212aa)
glutathione-s-transferase theta, gst, putative (EC:2.5.1.18)
Glutathione-s-transferase theta, gst, putative {ECO:0000313|EMBL:EEF26524.1}; EC=2.5.1.18 {ECO:0000313|EMBL:EEF26524.1};; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
Glutathione-s-transferase theta, gst, putative n=1 Tax=Ricinus communis RepID=B9TC88_RICCO
scnpilot_solids1_trim150_scaffold_567_22
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23368..24435)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MX36_CORCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFE04850.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
scnpilot_solids1_trim150_scaffold_567_23
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24546..25466
DNA (921bp) protein (307aa)
Biotin transporter BioY n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KT80_STEMA
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:KGQ18391.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
putative LysR family regulatory protein; K03566 LysR family transcriptional regulator, glycine cleavage system transcriptional activator
scnpilot_solids1_trim150_scaffold_567_24
unknown

Not on your lists

25690..25902
DNA (213bp) protein (71aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_567_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26002..26982
DNA (981bp) protein (327aa)
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2P8_9GAMM
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein {ECO:0000313|EMBL:EIL93739.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative oxidoreductase, aryl-alcohol dehydrogenase like protein
scnpilot_solids1_trim150_scaffold_567_26
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26989..28224)
DNA (1236bp) protein (412aa)
Isocitrate dehydrogenase {ECO:0000313|EMBL:AKC86740.1}; EC=1.1.1.42 {ECO:0000313|EMBL:AKC86740.1};; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
isocitrate dehydrogenase, NADP-dependent (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42]
isocitrate dehydrogenase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002EC7688
Displaying 26 items

View Taxonomy