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scnpilot_solids1_trim150_scaffold_1118

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1118_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..625)
DNA (624bp) protein (208aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
2-octaprenylphenol hydroxylase (EC:1.14.13.-)
Putative ubiquinone biosynthesis protein UbiB n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W782_9GAMM
scnpilot_solids1_trim150_scaffold_1118_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(622..1269)
DNA (648bp) protein (216aa)
Sterol-binding domain-containing protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W781_9GAMM
Sterol-binding domain-containing protein {ECO:0000313|EMBL:EIL95322.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1118_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1266..1742)
DNA (477bp) protein (159aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF34_9GAMM
putative rRNA methylase SpoU family
scnpilot_solids1_trim150_scaffold_1118_4
unknown

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comp(1784..1996)
DNA (213bp) protein (71aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1118_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2180..3505)
DNA (1326bp) protein (442aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
16S rRNA m(5)C-967 methyltransferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase RsmB n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLP3_9GAMM
scnpilot_solids1_trim150_scaffold_1118_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3502..4458)
DNA (957bp) protein (319aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Methionyl-tRNA formyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGN1_9GAMM
methionyl-tRNA formyltransferase
scnpilot_solids1_trim150_scaffold_1118_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4455..4964)
DNA (510bp) protein (170aa)
peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Peptide deformylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WK57_9GAMM
scnpilot_solids1_trim150_scaffold_1118_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5157..6296
DNA (1140bp) protein (380aa)
LysM domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NKZ6_9GAMM
LysM domain-containing protein
LysM domain-containing protein {ECO:0000313|EMBL:AGG90752.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1118_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6383..7606
DNA (1224bp) protein (408aa)
DNA protecting protein DprA n=1 Tax=Rhodanobacter denitrificans RepID=M4NTD5_9GAMM
DNA protecting protein DprA
DNA protecting protein DprA {ECO:0000313|EMBL:AGG90751.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1118_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7739..10297
DNA (2559bp) protein (853aa)
DNA topoisomerase 1 n=1 Tax=Rhodanobacter denitrificans RepID=I4WK60_9GAMM
DNA topoisomerase I, bacterial
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1118_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10298..10870
DNA (573bp) protein (191aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012127}; Short=TC-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852};; EC=2.7.7.87 {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012122};; L-threonylcarbamoyladenylate synthase {ECO:0000256|HAMAP-Rule:MF_01852}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaC {ECO:0000256|HAMAP-Rule:MF_01852}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaC {ECO:0000256|HAMAP-Rule:MF_01852}; Flags: Precursor
Threonylcarbamoyl-AMP synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIL5_9GAMM
putative translation factor (SUA5)
scnpilot_solids1_trim150_scaffold_1118_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10870..12219
DNA (1350bp) protein (450aa)
AMP-ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGM5_9GAMM
acyl-CoA synthetase/AMP-acid ligase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1118_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12333..13625
DNA (1293bp) protein (431aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Phosphoribosylamine--glycine ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGM4_9GAMM
phosphoribosylamine--glycine ligase
scnpilot_solids1_trim150_scaffold_1118_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13801..14688
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NTD0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90746.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1118_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14907..15074)
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRC4_9GAMM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ribosomal protein L33
scnpilot_solids1_trim150_scaffold_1118_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15084..15320)
DNA (237bp) protein (79aa)
50S ribosomal protein L28 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRC3_9GAMM
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
LSU ribosomal protein L28P
scnpilot_solids1_trim150_scaffold_1118_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15651..16046
DNA (396bp) protein (132aa)
Protein-export protein SecB n=1 Tax=Rhodanobacter denitrificans RepID=I4WJN2_9GAMM
protein translocase subunit secB
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 17 items

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