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scnpilot_solids1_trim150_scaffold_483

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_483_1
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..939)
DNA (939bp) protein (313aa)
Ribonucleoside-diphosphate reductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8L4_9GAMM
NrdJa {ECO:0000313|EMBL:GAN45212.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ribonucleotide reductase, alpha subunit
scnpilot_solids1_trim150_scaffold_483_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1369..2754
DNA (1386bp) protein (462aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C8B72
Heat-shock protein {ECO:0000313|EMBL:GAN45211.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
periplasmic serine protease, Do/DeqQ family
scnpilot_solids1_trim150_scaffold_483_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2945..4267
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344A2F3
Phosphate ABC transporter periplasmic protein {ECO:0000313|EMBL:EIL98317.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ABC-type phosphate transport system, periplasmic component
scnpilot_solids1_trim150_scaffold_483_4

Not on your lists

4316..5689
DNA (1374bp) protein (458aa)
Leucine aminopeptidase n=3 Tax=mine drainage metagenome RepID=T0YE09_9ZZZZ
Leucine aminopeptidase {ECO:0000313|EMBL:EQD33586.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
leucyl aminopeptidase
scnpilot_solids1_trim150_scaffold_483_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5708..7090)
DNA (1383bp) protein (461aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Histidine kinase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WB73_9GAMM
histidine kinase
scnpilot_solids1_trim150_scaffold_483_6
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7200..7865)
DNA (666bp) protein (222aa)
Winged helix family two component transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WXV7_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:GAN45595.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
winged helix family two component transcriptional regulator
scnpilot_solids1_trim150_scaffold_483_7
unknown

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8245..8466
DNA (222bp) protein (74aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_483_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8603..9247
DNA (645bp) protein (215aa)
Phosphoesterase PA-phosphatase-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5H3_9GAMM
Phosphoesterase PA-phosphatase-like protein {ECO:0000313|EMBL:EIL94714.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
PAP2 superfamily protein
scnpilot_solids1_trim150_scaffold_483_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9320..10423
DNA (1104bp) protein (368aa)
ADP-heptose--LPS heptosyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAW1_9GAMM
ADP-heptose--LPS heptosyltransferase {ECO:0000313|EMBL:EIL96602.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ADP-heptose--LPS heptosyltransferase
scnpilot_solids1_trim150_scaffold_483_10
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10442..12682)
DNA (2241bp) protein (747aa)
Isocitrate dehydrogenase {ECO:0000313|EMBL:KHD64589.1}; EC=1.1.1.42 {ECO:0000313|EMBL:KHD64589.1};; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
icd; isocitrate dehydrogenase (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42]
isocitrate dehydrogenase n=1 Tax=Dyella ginsengisoli RepID=UPI00034AA5B4
scnpilot_solids1_trim150_scaffold_483_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12807..13934
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034800D8
GumN protein {ECO:0000313|EMBL:EIL89125.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
GumN protein
scnpilot_solids1_trim150_scaffold_483_12
Xanthomonas vasicola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13948..14526
DNA (579bp) protein (193aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=56459 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vasicola.;"
ribosomal large subunit pseudouridine synthase E n=1 Tax=Xanthomonas vasicola RepID=UPI0001CBFFB1
ribosomal large subunit pseudouridine synthase e protein
scnpilot_solids1_trim150_scaffold_483_13
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14523..15296
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B3DF40
SAM-dependent methyltransferase {ECO:0000313|EMBL:KGI79047.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
methylase
scnpilot_solids1_trim150_scaffold_483_14
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15300..16091)
DNA (792bp) protein (264aa)
Mg-dependent DNase (EC:3.1.21.-)
Mg-dependent DNase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7P4_9GAMM
Preprotein translocase subunit TatD {ECO:0000313|EMBL:GAN45603.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
scnpilot_solids1_trim150_scaffold_483_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16137..18812
DNA (2676bp) protein (892aa)
hrpB; ATP-dependent RNA helicase (EC:3.6.1.-); K03579 ATP-dependent helicase HrpB [EC:3.6.4.13]
ATP-dependent RNA helicase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VW24_9GAMM
ATP-dependent RNA helicase {ECO:0000313|EMBL:EIL91415.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids1_trim150_scaffold_483_16
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18817..19536)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Plesiomonas shigelloides 302-73 RepID=R8APT7_PLESH
Uncharacterized protein {ECO:0000313|EMBL:KGI78923.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein; K09797 hypothetical protein
scnpilot_solids1_trim150_scaffold_483_17
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19533..21038)
DNA (1506bp) protein (502aa)
Putative aminopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NM89_9GAMM
Peptidase M28 {ECO:0000313|EMBL:GAN45600.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
putative aminopeptidase
scnpilot_solids1_trim150_scaffold_483_18
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21106..22680)
DNA (1575bp) protein (525aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037409AA rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN45962.1}; Flags: Fragment;; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase
scnpilot_solids1_trim150_scaffold_483_19
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22951..23532)
DNA (582bp) protein (194aa)
Bacterioferritin (Cytochrome b1) n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDU8_9GAMM
Bacterioferritin {ECO:0000313|EMBL:AHX15696.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
bacterioferritin (cytochrome b1)
scnpilot_solids1_trim150_scaffold_483_20
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23623..25482)
DNA (1860bp) protein (620aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003649A2B
Uncharacterized protein {ECO:0000313|EMBL:KFN41851.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_483_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25515..27392)
DNA (1878bp) protein (626aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Phosphomethylpyrimidine synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDG7_9GAMM rbh
thiamine biosynthesis protein ThiC; K03147 thiamine biosynthesis protein ThiC
scnpilot_solids1_trim150_scaffold_483_22
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27739..28380)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000374E972
Uncharacterized protein {ECO:0000313|EMBL:KFN45230.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
TetR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_483_23

Not on your lists

28745..29410
DNA (666bp) protein (222aa)
Protein-L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:EQD41331.1}; EC=2.1.1.77 {ECO:0000313|EMBL:EQD41331.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
protein-L-isoaspartate carboxylmethyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate(D-aspartate) O-methyltransferase n=2 Tax=mine drainage metagenome RepID=T0Z046_9ZZZZ
scnpilot_solids1_trim150_scaffold_483_24
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29410..30897
DNA (1488bp) protein (496aa)
Type I secretion outer membrane protein, TolC family n=1 Tax=mine drainage metagenome RepID=T1BM54_9ZZZZ
Type I secretion protein TolC {ECO:0000313|EMBL:GAN45914.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
type I secretion outer membrane protein, TolC family
scnpilot_solids1_trim150_scaffold_483_25
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30933..32267)
DNA (1335bp) protein (445aa)
3-deoxy-D-manno-octulosonic acid transferase n=1 Tax=Dyella japonica RepID=UPI00031F49B3
3-deoxy-D-manno-octulosonic acid transferase {ECO:0000313|EMBL:AIF45782.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
3-deoxy-D-manno-octulosonic-acid transferase
scnpilot_solids1_trim150_scaffold_483_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32493..33521)
DNA (1029bp) protein (343aa)
Putative permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8R1_9GAMM
Putative permease {ECO:0000313|EMBL:EIL95852.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative permease
scnpilot_solids1_trim150_scaffold_483_27
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33614..34321
DNA (708bp) protein (236aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
pyrF; orotidine 5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
Orotidine 5'-phosphate decarboxylase n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2U8F9_XANAP
scnpilot_solids1_trim150_scaffold_483_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34368..35390
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VR09_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89650.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_483_29
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35529..38057
DNA (2529bp) protein (843aa)
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00393}; Short=GPAT {ECO:0000256|HAMAP-Rule:MF_00393};; EC=2.3.1.15 {ECO:0000256|HAMAP-Rule:MF_00393};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
glycerol-3-phosphate acyltransferase (EC:2.3.1.15)
glycerol-3-phosphate acyltransferase n=1 Tax=Dyella japonica RepID=UPI0002ECB4CE
scnpilot_solids1_trim150_scaffold_483_30
unknown

Not on your lists

comp(38071..38499)
DNA (429bp) protein (143aa)

This feature has no annotations

Displaying items 1-30 of 32 in total

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