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scnpilot_solids1_trim150_scaffold_686

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_686_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1484)
DNA (1482bp) protein (494aa)
putative metalloendopeptidase; K07386 putative endopeptidase [EC:3.4.24.-]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003737660
Metalloendopeptidase {ECO:0000313|EMBL:AHX12214.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_solids1_trim150_scaffold_686_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1638..1973
DNA (336bp) protein (112aa)
ArsR family transcriptional regulator n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B36CC5
ArsR family transcriptional regulator {ECO:0000313|EMBL:GAN45640.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ArsR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_686_3
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1970..2437
DNA (468bp) protein (156aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJE6_9GAMM
Glyoxalase {ECO:0000313|EMBL:GAN45639.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
lactoylglutathione lyase
scnpilot_solids1_trim150_scaffold_686_4
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2430..2846
DNA (417bp) protein (139aa)
protein tyrosine phosphatase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B54317
Uncharacterized protein {ECO:0000313|EMBL:KFN48223.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
protein tyrosine phosphatase
scnpilot_solids1_trim150_scaffold_686_5
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2843..3535
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000305F58C
MIP family channel protein {ECO:0000313|EMBL:AKC87957.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
transport transmembrane protein
scnpilot_solids1_trim150_scaffold_686_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3532..4023)
DNA (492bp) protein (164aa)
Single-stranded DNA-binding protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W834_9GAMM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
single stranded DNA-binding protein; K03111 single-strand DNA-binding protein
scnpilot_solids1_trim150_scaffold_686_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4185..5192
DNA (1008bp) protein (336aa)
Geranylgeranyl pyrophosphate synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WT73_9GAMM
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:EIL94592.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
geranylgeranyl pyrophosphate synthase
scnpilot_solids1_trim150_scaffold_686_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5318..6109)
DNA (792bp) protein (264aa)
Dienelactone hydrolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WEV3_9GAMM
dienelactone hydrolase-like enzyme
Dienelactone hydrolase-like enzyme {ECO:0000313|EMBL:AGG90315.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_686_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6134..7267)
DNA (1134bp) protein (378aa)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WEV2_9GAMM
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family {ECO:0000313|EMBL:AGG90316.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_686_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7312..8535)
DNA (1224bp) protein (408aa)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC:1.14.13.-)
2-octaprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:AGG90317.1}; EC=1.14.13.- {ECO:0000313|EMBL:AGG90317.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003644F6E
scnpilot_solids1_trim150_scaffold_686_11
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8626..9234
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003709FC9
Uncharacterized protein {ECO:0000313|EMBL:KGQ18909.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_686_12
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9302..9997
DNA (696bp) protein (232aa)
ATP--cobalamin adenosyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI000348F24E
ATP--cobalamin adenosyltransferase {ECO:0000313|EMBL:KGI77045.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ATP:cob(I)alamin adenosyltransferase
scnpilot_solids1_trim150_scaffold_686_13
unknown

Not on your lists

10024..10224
DNA (201bp) protein (67aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_686_14
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10227..11144
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037A8AAE
Acetoin utilization protein {ECO:0000313|EMBL:AIF46922.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
deacetylase, histone deacetylase/acetoin utilization protein
scnpilot_solids1_trim150_scaffold_686_15
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11307..11690)
DNA (384bp) protein (128aa)
Conserved uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FLM5_STIAD
hypothetical protein
Conserved uncharacterized protein {ECO:0000313|EMBL:ADO74289.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
scnpilot_solids1_trim150_scaffold_686_16
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11706..12122)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI0003478A42
hypothetical protein; K15977 putative oxidoreductase
DoxX family protein {ECO:0000313|EMBL:ABY28850.1}; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
scnpilot_solids1_trim150_scaffold_686_17
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12213..13475)
DNA (1263bp) protein (421aa)
aminopeptidase P (EC:3.4.11.9)
Xaa-Pro aminopeptidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1A2_9GAMM
Proline aminopeptidase P II {ECO:0000313|EMBL:GAN45396.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
scnpilot_solids1_trim150_scaffold_686_18
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13514..14035)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000360D115
Uncharacterized protein {ECO:0000313|EMBL:GAN45397.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_686_19
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14345..18934
DNA (4590bp) protein (1530aa)
Sensory box protein n=1 Tax=Shewanella sp. HN-41 RepID=F7RTA1_9GAMM rbh
Diguanylate cyclase {ECO:0000313|EMBL:GAN45398.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
sensory box protein rbh
scnpilot_solids1_trim150_scaffold_686_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19019..19246
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN46_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00888.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
TIGR02449 family protein
scnpilot_solids1_trim150_scaffold_686_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19255..19560
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W199_9GAMM
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein; K09888 cell division protein ZapA
scnpilot_solids1_trim150_scaffold_686_22
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20018..20620
DNA (603bp) protein (201aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037D9481
5,10-methenyltetrahydrofolate synthetase
scnpilot_solids1_trim150_scaffold_686_23
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20629..21078
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003728DBD
EVE domain-containing protein {ECO:0000313|EMBL:KGQ20118.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_686_24
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21099..21743
DNA (645bp) protein (215aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase A n=1 Tax=Rhodanobacter denitrificans RepID=M4NK33_9GAMM
scnpilot_solids1_trim150_scaffold_686_25
unknown

Not on your lists

comp(21800..22234)
DNA (435bp) protein (145aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_686_trna_1
unknown

Not on your lists

comp(22436..22507)
DNA (72bp)
transferRNA Gln
scnpilot_solids1_trim150_scaffold_686_26

Not on your lists


comp(22679..23074)
DNA (396bp) protein (132aa)
Ribosomal protein S9 n=2 Tax=mine drainage metagenome RepID=T1AT70_9ZZZZ
Ribosomal protein S9 {ECO:0000313|EMBL:EQD59733.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribosomal protein S9
scnpilot_solids1_trim150_scaffold_686_27
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23077..23505)
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=1 Tax=Dyella ginsengisoli RepID=UPI000345D4CC
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
scnpilot_solids1_trim150_scaffold_686_28
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23788..24309
DNA (522bp) protein (174aa)
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658, ECO:0000256|SAAS:SAAS00010155}; EC=1.14.13.- {ECO:0000256|HAMAP-Rule:MF_01658, ECO:0000256|SAAS:SAAS00010150};; 5-demethoxyubiquinone hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ubiquinone biosynthesis protein; K06134 ubiquinone biosynthesis monooxygenase Coq7 [EC:1.14.13.-]
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Dyella japonica RepID=UPI0002E129F9
Displaying 29 items

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