ggKbase home page

scnpilot_solids1_trim150_scaffold_745

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_745_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..479)
DNA (477bp) protein (159aa)
Multidrug resistance efflux pump n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEV0_9GAMM
Multidrug resistance efflux pump {ECO:0000313|EMBL:EIL97991.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
multidrug resistance efflux pump
scnpilot_solids1_trim150_scaffold_745_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(476..1972)
DNA (1497bp) protein (499aa)
NodT family efflux transporter outer membrane lipoprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VUU8_9GAMM
NodT family efflux transporter outer membrane lipoprotein {ECO:0000313|EMBL:EIL90989.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
efflux transporter, outer membrane factor lipoprotein, NodT family
scnpilot_solids1_trim150_scaffold_745_3
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2137..2595)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BBD41
MarR family transcriptional regulator {ECO:0000313|EMBL:AIF46419.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
transcriptional regulator
scnpilot_solids1_trim150_scaffold_745_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2718..3203
DNA (486bp) protein (162aa)
Lipid A 3-O-deacylase (PagL) n=1 Tax=Rhodanobacter denitrificans RepID=I4WN04_9GAMM
Lipid A 3-O-deacylase (PagL)
Lipid A 3-O-deacylase (PagL) {ECO:0000313|EMBL:AGG87328.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_745_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3338..4192)
DNA (855bp) protein (285aa)
Rhodanese-related sulfurtransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPE4_9GAMM
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:EIL89085.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
rhodanese-related sulfurtransferase
scnpilot_solids1_trim150_scaffold_745_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4189..4794)
DNA (606bp) protein (202aa)
NTP pyrophosphohydrolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WPR0_9GAMM
MutT-nudix family protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_745_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5179..5895)
DNA (717bp) protein (239aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WPR2_9GAMM
FKBP-type peptidyl-prolyl cis-trans isomerase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_745_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6033..6866)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WPR4_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89669.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_745_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6868..8709)
DNA (1842bp) protein (614aa)
DNA mismatch repair protein MutL n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB11_9GAMM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA mismatch repair protein MutL
scnpilot_solids1_trim150_scaffold_745_10
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8821..10227)
DNA (1407bp) protein (469aa)
LOG family protein ygdH n=1 Tax=Dyella japonica RepID=UPI000317DB07
LOG family protein {ECO:0000313|EMBL:GAN45218.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
putative Rossmann fold nucleotide-binding protein
scnpilot_solids1_trim150_scaffold_745_11
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10232..10837)
DNA (606bp) protein (202aa)
membrane protein n=1 Tax=Dyella japonica RepID=UPI0003097BC8
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
multiple antibiotic transporter
scnpilot_solids1_trim150_scaffold_745_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10841..11626)
DNA (786bp) protein (262aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7S1_9GAMM
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EIL95512.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
scnpilot_solids1_trim150_scaffold_745_13
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11623..11952)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000376596A
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein; K07390 monothiol glutaredoxin
scnpilot_solids1_trim150_scaffold_745_14
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12064..12642
DNA (579bp) protein (193aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
superoxide dismutase n=1 Tax=Rudaea cellulosilytica RepID=UPI00036E4E46 rbh
superoxide dismutase
scnpilot_solids1_trim150_scaffold_745_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12683..14122)
DNA (1440bp) protein (480aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Phosphoglucosamine mutase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI07_9GAMM
phosphoglucosamine mutase
scnpilot_solids1_trim150_scaffold_745_16
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14232..15134)
DNA (903bp) protein (301aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000377C50B rbh
dihydropteroate synthase
scnpilot_solids1_trim150_scaffold_745_17
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15221..17056)
DNA (1836bp) protein (612aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000380C89F rbh
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
scnpilot_solids1_trim150_scaffold_745_18
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17053..18864)
DNA (1812bp) protein (604aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B4D4AF
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
scnpilot_solids1_trim150_scaffold_745_19

Not on your lists

comp(18861..20933)
DNA (2073bp) protein (691aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F34B69 rbh
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49190.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
TPR Domain containing protein
scnpilot_solids1_trim150_scaffold_745_20

Not on your lists

comp(21025..23022)
DNA (1998bp) protein (666aa)
membrane protease FtsH catalytic subunit (EC:3.4.24.-)
Cell division protein FtsH (Fragment) n=2 Tax=mine drainage metagenome RepID=T1BEF8_9ZZZZ rbh
Cell division protein FtsH {ECO:0000313|EMBL:EQD68217.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
scnpilot_solids1_trim150_scaffold_745_21
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23117..23425)
DNA (309bp) protein (103aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
23S rRNA methylase (EC:2.1.1.-)
23S rRNA methyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI000344EB2D
scnpilot_solids1_trim150_scaffold_745_22
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23425..23712)
DNA (288bp) protein (96aa)
23S rRNA methylase; K02427 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aur
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L047_FRAAD
scnpilot_solids1_trim150_scaffold_745_23

Not on your lists

23817..24113
DNA (297bp) protein (99aa)
RNA-binding, CRM domain protein n=1 Tax=mine drainage metagenome RepID=T1CJZ8_9ZZZZ
RNA-binding, CRM domain protein {ECO:0000313|EMBL:EQD68215.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative RNA-binding protein containing KH domain, possibly ribosomal protein; K07574 RNA-binding protein
scnpilot_solids1_trim150_scaffold_745_24
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24198..24614
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW93_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGI78114.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_745_25
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24731..25804)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000300BE8E
Peptidase M23 {ECO:0000313|EMBL:AIF48421.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
metalloendopeptidase-like membrane protein; K06194 lipoprotein NlpD
scnpilot_solids1_trim150_scaffold_745_26
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25852..26454)
DNA (603bp) protein (201aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQX5_PSEUU
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV26647.1}; Flags: Precursor;; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_745_27
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26462..27142)
DNA (681bp) protein (227aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
L-isoaspartate protein carboxylmethyltransferase type II n=1 Tax=mine drainage metagenome RepID=T1B6H0_9ZZZZ
protein-L-isoaspartate and D-aspartate O-methyltransferase
scnpilot_solids1_trim150_scaffold_745_28
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27139..27954)
DNA (816bp) protein (272aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
5'-nucleotidase SurE n=1 Tax=Rhodanobacter sp. 115 RepID=I4VK59_9GAMM
5'/3'-nucleotidase SurE
scnpilot_solids1_trim150_scaffold_745_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28024..28380)
DNA (357bp) protein (119aa)
Cell division protein FtsB n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWA3_9GAMM
Cell division protein FtsB {ECO:0000256|HAMAP-Rule:MF_00599, ECO:0000256|SAAS:SAAS00014481}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
septum formation initiator
scnpilot_solids1_trim150_scaffold_745_30
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28392..29705)
DNA (1314bp) protein (438aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
phosphopyruvate hydratase; K01689 enolase [EC:4.2.1.11]
Enolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPH4_9GAMM
Displaying items 1-30 of 41 in total

View Taxonomy