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scnpilot_solids1_trim150_scaffold_1110

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1110_1
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1..1926
DNA (1926bp) protein (642aa)
Putative surface layer protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46EA5_METBF
Cell surface protein {ECO:0000313|EMBL:AKB80284.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
PKD domain-containing protein
scnpilot_solids1_trim150_scaffold_1110_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2251..4017
DNA (1767bp) protein (589aa)
Sodium/hydrogen exchanger n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPK5_9GAMM
Sodium/hydrogen exchanger {ECO:0000313|EMBL:EIM01397.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Kef-type K+ transport system, predicted NAD-binding component
scnpilot_solids1_trim150_scaffold_1110_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4031..4831)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVP7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91288.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_1110_4
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4937..6769)
DNA (1833bp) protein (611aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3Q2_NITHN
Uncharacterized protein {ECO:0000313|EMBL:AKC87885.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1110_5
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6853..7590)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI000378A49B
Uncharacterized protein {ECO:0000313|EMBL:KGI78716.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
surfeit locus 1 family protein (Surf1-like)
scnpilot_solids1_trim150_scaffold_1110_6
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7613..7957)
DNA (345bp) protein (115aa)
Cytochrome O ubiquinol oxidase subunit IV (EC:1.10.3.-)
Cytochrome o ubiquinol oxidase subunit IV n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJK0_9GAMM
Cytochrome O ubiquinol oxidase {ECO:0000313|EMBL:KGI78501.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
scnpilot_solids1_trim150_scaffold_1110_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7921..8574)
DNA (654bp) protein (218aa)
cyoC; cytochrome O ubiquinol oxidase subunit III (EC:1.10.3.-); K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-]
Cytochrome ubiquinol oxidase subunit III n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJK1_9GAMM rbh
Cytochrome ubiquinol oxidase subunit III {ECO:0000313|EMBL:EIL87392.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids1_trim150_scaffold_1110_8
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8571..10601)
DNA (2031bp) protein (677aa)
cyoB; cytochrome O ubiquinol oxidase, subunit I (EC:1.10.3.-); K02298 cytochrome o ubiquinol oxidase subunit I [EC:1.10.3.-]
cytochrome O ubiquinol oxidase n=1 Tax=Arhodomonas aquaeolei RepID=UPI000367272F
Cytochrome o ubiquinol oxidase subunit I 2 {ECO:0000313|EMBL:EIT67974.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
scnpilot_solids1_trim150_scaffold_1110_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10625..11620)
DNA (996bp) protein (332aa)
Cytochrome o ubiquinol oxidase subunit II n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJK4_9GAMM rbh
Cytochrome o ubiquinol oxidase subunit II {ECO:0000313|EMBL:EIL87395.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cyoA; ubiquinol oxidase subunit II
scnpilot_solids1_trim150_scaffold_1110_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11840..13171
DNA (1332bp) protein (444aa)
General substrate transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJK5_9GAMM rbh
Arabinose ABC transporter permease {ECO:0000313|EMBL:KGI78499.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
transporter protein
scnpilot_solids1_trim150_scaffold_1110_11

Not on your lists

13954..14799
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000346CE8F rbh
Sulfotransferase {ECO:0000313|EMBL:EQD26513.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
sulfotransferase
scnpilot_solids1_trim150_scaffold_1110_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14991..15482)
DNA (492bp) protein (164aa)
SsrA-binding protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH2_9GAMM
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1110_13
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15672..16184
DNA (513bp) protein (171aa)
Oligoketide cyclase/lipid transport protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6T9_9GAMM
Oligoketide cyclase {ECO:0000313|EMBL:KGI78196.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
oligoketide cyclase/lipid transport protein
scnpilot_solids1_trim150_scaffold_1110_14
Yersinia ruckeri, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16177..16464
DNA (288bp) protein (96aa)
UPF0125 protein ROD_25671 n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TUP1_CITRI
UPF0125 protein BD65_1100 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=29486 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia ruckeri.;"
hypothetical protein; K09801 hypothetical protein
scnpilot_solids1_trim150_scaffold_1110_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16685..17143)
DNA (459bp) protein (153aa)
Small protein A (TmRNA-binding) n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNN8_9GAMM
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
small protein A (tmRNA-binding)
scnpilot_solids1_trim150_scaffold_1110_16
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17223..17627
DNA (405bp) protein (135aa)
Fur family transcriptional regulator n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5F294
Fur family transcriptional regulator {ECO:0000313|EMBL:KFN49985.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Fe2+/Zn2+ uptake regulation protein
scnpilot_solids1_trim150_scaffold_1110_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17688..19493
DNA (1806bp) protein (602aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003636E9C
Uncharacterized protein {ECO:0000313|EMBL:EIL92446.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1110_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19659..21335)
DNA (1677bp) protein (559aa)
DNA repair protein RecN n=1 Tax=Rhodanobacter denitrificans RepID=M4NH33_9GAMM
DNA replication and repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1110_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21507..22550
DNA (1044bp) protein (348aa)
HrcA family transcriptional regulator n=1 Tax=Dyella japonica RepID=UPI00031B8E66
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
heat-inducible transcription repressor HrcA
scnpilot_solids1_trim150_scaffold_1110_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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22759..23304
DNA (546bp) protein (182aa)
Protein GrpE n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI84_9GAMM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
molecular chaperone GrpE (heat shock protein)
scnpilot_solids1_trim150_scaffold_1110_21

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23396..24100
DNA (705bp) protein (235aa)
Molecular chaperone DnaK (Fragment) n=4 Tax=mine drainage metagenome RepID=T1CFG5_9ZZZZ
Molecular chaperone DnaK {ECO:0000313|EMBL:EQD65640.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
chaperone protein DnaK; K04043 molecular chaperone DnaK
Displaying 21 items

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