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scnpilot_solids1_trim150_scaffold_1277

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1277_1
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..329)
DNA (327bp) protein (109aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
glutathione synthetase (EC:6.3.2.3)
Glutathione synthetase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJT9_9GAMM
scnpilot_solids1_trim150_scaffold_1277_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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724..1176
DNA (453bp) protein (151aa)
pilus response regulator PilG n=1 Tax=Dyella ginsengisoli RepID=UPI0003675625
Pilus assembly protein PilG {ECO:0000313|EMBL:GAN45288.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
response regulator receiver protein; K02657 twitching motility two-component system response regulator PilG
scnpilot_solids1_trim150_scaffold_1277_3
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1216..1587
DNA (372bp) protein (124aa)
Type IV pilus response regulator PilH n=1 Tax=mine drainage metagenome RepID=T1B5H2_9ZZZZ
Chemotaxis protein CheY {ECO:0000313|EMBL:GAN45287.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
scnpilot_solids1_trim150_scaffold_1277_4
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1594..2217
DNA (624bp) protein (208aa)
chemotaxis protein CheW n=1 Tax=Dyella ginsengisoli RepID=UPI0003470995
Chemotaxis protein CheW {ECO:0000313|EMBL:GAN45286.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
chemotaxis signal transduction protein
scnpilot_solids1_trim150_scaffold_1277_5
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2432..4432
DNA (2001bp) protein (667aa)
Methyl-accepting chemotaxis protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ29_9GAMM
Chemotaxis protein {ECO:0000313|EMBL:GAN45285.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
methyl-accepting chemotaxis protein
scnpilot_solids1_trim150_scaffold_1277_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4448..10633
DNA (6186bp) protein (2062aa)
CheA signal transduction histidine kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV63_9GAMM
CheA signal transduction histidine kinase {ECO:0000313|EMBL:EIL91104.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
chemotaxis protein histidine kinase-like protein
scnpilot_solids1_trim150_scaffold_1277_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10626..11831
DNA (1206bp) protein (402aa)
Chemotaxis-like protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9X6_9GAMM
Chemotaxis-like protein {ECO:0000313|EMBL:EIL96267.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
scnpilot_solids1_trim150_scaffold_1277_8
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11828..12304
DNA (477bp) protein (159aa)
Chemotaxis-related protein n=1 Tax=mine drainage metagenome RepID=T0Z811_9ZZZZ
Chemotaxis protein CheW {ECO:0000313|EMBL:GAN45983.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
chemotaxis signal transduction protein
scnpilot_solids1_trim150_scaffold_1277_9
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12294..13187
DNA (894bp) protein (298aa)
quercetin 2,3-dioxygenase (EC:1.13.11.24); K06911 rbh
Quercetin 2,3-dioxygenase PA1205 {ECO:0000313|EMBL:AEI82851.1}; EC=1.13.11.24 {ECO:0000313|EMBL:AEI82851.1};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
Quercetin 2,3-dioxygenase PA1205 n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GYB0_CUPNN rbh
scnpilot_solids1_trim150_scaffold_1277_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13375..14355)
DNA (981bp) protein (327aa)
Transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4VP72_9GAMM rbh
Transcriptional regulator {ECO:0000313|EMBL:EIL89013.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcriptional regulator rbh
scnpilot_solids1_trim150_scaffold_1277_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14537..15814
DNA (1278bp) protein (426aa)
RND family efflux transporter, MFP subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4VP71_9GAMM rbh
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EIL89012.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
RND family efflux transporter, MFP subunit
scnpilot_solids1_trim150_scaffold_1277_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15928..19113
DNA (3186bp) protein (1062aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL26_9GAMM rbh
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter {ECO:0000313|EMBL:EIL87917.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter rbh
scnpilot_solids1_trim150_scaffold_1277_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19115..20557
DNA (1443bp) protein (481aa)
NodT family efflux transporter outer membrane lipoprotein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VP70_9GAMM rbh
NodT family efflux transporter outer membrane lipoprotein {ECO:0000313|EMBL:EIL89011.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
efflux transporter, outer membrane factor lipoprotein, NodT family
scnpilot_solids1_trim150_scaffold_1277_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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20554..21018
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Erwinia toletana RepID=UPI00034CD426
snoaL-like domain-containing protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1277_15
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21070..21807)
DNA (738bp) protein (246aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C1DFA
RNA methyltransferase, RsmE family
scnpilot_solids1_trim150_scaffold_1277_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21937..22287
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030907A4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88031.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1277_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22415..23803)
DNA (1389bp) protein (463aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; EC=2.6.1.62 {ECO:0000256|HAMAP-Rule:MF_00834};; 7,8-diamino-pelargonic acid aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; 7,8-diaminononanoate synthase {ECO:0000256|HAMAP-Rule:MF_00834}; Diaminopelargonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00834}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ23_9GAMM
adenosylmethionine-8-amino-7-oxononanoate transaminase
scnpilot_solids1_trim150_scaffold_1277_18
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23865..24695
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00038224A2 rbh
Inositol-phosphate phosphatase {ECO:0000313|EMBL:GAN45281.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
inositol monophosphatase/fructose-1,6-bisphosphatase family protein
scnpilot_solids1_trim150_scaffold_1277_19
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24778..24981
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZK9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92650.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1277_20
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25082..25783
DNA (702bp) protein (234aa)
Two component transcriptional regulator, winged helix family (Fragment) n=1 Tax=mine drainage metagenome RepID=T1AS96_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN45926.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
phoP; DNA-binding heavy metal response regulator
scnpilot_solids1_trim150_scaffold_1277_21
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26005..26595
DNA (591bp) protein (197aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Dyella ginsengisoli RepID=UPI0003472AAE
scnpilot_solids1_trim150_scaffold_1277_22
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26747..27031
DNA (285bp) protein (95aa)
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFN47654.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
periplasmic binding protein id=2895261 bin=GWF1_Xanthomonadales_69_6 species=Xanthomonas translucens genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
ABC-type Fe3+-hydroxamate transport system, periplasmic component
Displaying 22 items

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