ggKbase home page

scnpilot_solids1_trim150_scaffold_1291

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1291_1
Alistipes sp. CAG:157, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1..228
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Paenibacillus massiliensis RepID=UPI00035D4415
Uncharacterized protein {ECO:0000313|EMBL:CCZ98669.1}; TaxID=1262692 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:157.;"
AraC family transcriptional regulator
scnpilot_solids1_trim150_scaffold_1291_2
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

366..2699
DNA (2334bp) protein (778aa)
Putative uncharacterized protein n=2 Tax=Chloroflexus RepID=A9WJ94_CHLAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY34371.1}; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl).;"
scnpilot_solids1_trim150_scaffold_1291_3
R_NC10_66_22, NC10, Bacteria

Not on your lists

2734..3108
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WUM0_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
scnpilot_solids1_trim150_scaffold_1291_4
unknown

Not on your lists

3068..3349
DNA (282bp) protein (94aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1291_5
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

3391..4692
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI00036EAEC1
Uncharacterized protein {ECO:0000313|EMBL:AIC17268.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1291_6
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4780..5784
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JU19_BURVG
Aspergillopepsin-2 {ECO:0000313|EMBL:EWM11073.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1291_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5996..7483
DNA (1488bp) protein (496aa)
Uncharacterized protein n=1 Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6KTY4_STRRC
multicopper oxidase, type 2
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
scnpilot_solids1_trim150_scaffold_1291_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7577..8005
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W567_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94608.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1291_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8126..9076
DNA (951bp) protein (317aa)
cysteine synthase (EC:2.5.1.47)
Pyridoxal-5'-phosphate-dependent enzyme subunit beta n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWA8_9GAMM
Pyridoxal-5'-phosphate-dependent enzyme subunit beta {ECO:0000313|EMBL:EIL91499.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_1291_10
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

9209..9679
DNA (471bp) protein (157aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
alkylhydroperoxidase AhpD family core domain protein id=12556323 bin=CNBR_ACIDO species=Rhodanobacter denitrificans genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
alkylhydroperoxidase AhpD family core domain protein
scnpilot_solids1_trim150_scaffold_1291_11
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9685..10101
DNA (417bp) protein (139aa)
Ribonucleotide reductase subunit alpha n=1 Tax=Rhodanobacter denitrificans RepID=I4WYJ6_9GAMM
Ribonucleotide reductase subunit alpha {ECO:0000313|EMBL:KGM53772.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1291_trna_1
unknown

Not on your lists

10227..10299
DNA (73bp)
transferRNA Phe
scnpilot_solids1_trim150_scaffold_1291_12
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10312..10647)
DNA (336bp) protein (112aa)
methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Dyella japonica RepID=UPI00037A55CF
Cysteine methyltransferase {ECO:0000313|EMBL:AIF47165.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
putative methylated DNA-protein cysteine methyltransferase
scnpilot_solids1_trim150_scaffold_1291_13

Not on your lists

10749..11405
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T0Z2Z5_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EQD42321.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1291_14
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11412..11675)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY20_9GAMM
Membrane protein {ECO:0000313|EMBL:KGI77339.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1291_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11672..12412)
DNA (741bp) protein (247aa)
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB {ECO:0000256|HAMAP-Rule:MF_01887}; EC=2.1.1.185 {ECO:0000256|HAMAP-Rule:MF_01887};; 23S rRNA (guanosine2251 2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; 23S rRNA Gm2251 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
23S rRNA Gm-2251 2'-O-methyltransferase (EC:2.1.1.-)
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8J6_9GAMM
scnpilot_solids1_trim150_scaffold_1291_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12483..14258)
DNA (1776bp) protein (592aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
RNAse R (EC:3.1.-.-)
Ribonuclease R n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIR1_9GAMM
scnpilot_solids1_trim150_scaffold_1291_17

Not on your lists

comp(15085..15708)
DNA (624bp) protein (208aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=mine drainage metagenome RepID=T1B3U2_9ZZZZ
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:EQD67541.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Peroxiredoxin
scnpilot_solids1_trim150_scaffold_1291_trna_2
unknown

Not on your lists

15860..15941
DNA (82bp)
transferRNA Leu
scnpilot_solids1_trim150_scaffold_1291_18
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16213..16626
DNA (414bp) protein (138aa)
hypothetical protein n=2 Tax=Xanthomonas RepID=UPI00035FE7E5
Uncharacterized protein {ECO:0000313|EMBL:GAN45342.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
scnpilot_solids1_trim150_scaffold_1291_19
Synechococcus sp. PCC 7002, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(16695..17114)
DNA (420bp) protein (140aa)
LCCL domain protein n=1 Tax=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) RepID=B1XJV7_SYNP2
LCCL domain-containing protein
LCCL domain protein {ECO:0000313|EMBL:ACA99085.1}; TaxID=32049 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum; quadruplicatum).;"
scnpilot_solids1_trim150_scaffold_1291_20
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17195..17743)
DNA (549bp) protein (183aa)
Tax=RBG_16_Deltaproteobacteria_71_12_curated
scnpilot_solids1_trim150_scaffold_1291_21
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

17959..20742
DNA (2784bp) protein (928aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000376EFAE rbh
Lysine decarboxylase transcriptional regulator, CadC {ECO:0000313|EMBL:ABF42545.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
DNA-binding protein
scnpilot_solids1_trim150_scaffold_1291_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20743..21849)
DNA (1107bp) protein (369aa)
Heavy metal efflux pump CzcA n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUI8_9GAMM
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:EIL90879.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
heavy metal efflux pump, cobalt-zinc-cadmium
scnpilot_solids1_trim150_scaffold_1291_23
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21842..23842)
DNA (2001bp) protein (667aa)
Heavy metal efflux pump CzcA n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUI8_9GAMM
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:EIL90879.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
heavy metal efflux pump, cobalt-zinc-cadmium
scnpilot_solids1_trim150_scaffold_1291_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23839..25164)
DNA (1326bp) protein (442aa)
Secretion protein HlyD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN92_9GAMM
Secretion protein HlyD {ECO:0000313|EMBL:EIM00934.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
RND family efflux transporter, MFP subunit
scnpilot_solids1_trim150_scaffold_1291_25
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25161..26669)
DNA (1509bp) protein (503aa)
Heavy metal cation tricomponent efflux outer membrane porin ZneC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN93_9GAMM
Histidine kinase {ECO:0000313|EMBL:AHX15229.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
efflux transporter, outer membrane factor lipoprotein, NodT family
scnpilot_solids1_trim150_scaffold_1291_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27143..29476)
DNA (2334bp) protein (778aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NI99_9GAMM
dipeptidyl aminopeptidase/acylaminoacyl peptidase
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:AGG90675.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1291_27
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29550..29822)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI0003662952
Uncharacterized protein {ECO:0000313|EMBL:KFA93200.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
scnpilot_solids1_trim150_scaffold_1291_28
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29832..30287)
DNA (456bp) protein (152aa)
lactoylglutathione lyase n=1 Tax=Dyella ginsengisoli RepID=UPI0003482C25
Lactoylglutathione lyase {ECO:0000313|EMBL:EYR67554.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
lactoylglutathione lyase-like lyase
Displaying items 1-30 of 31 in total

View Taxonomy