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scnpilot_solids1_trim150_scaffold_1025_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1025_curated_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..1339
DNA (1338bp) protein (446aa)
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4]
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Aspartokinase n=2 Tax=Acidovorax RepID=A1W6E5_ACISJ
scnpilot_solids1_trim150_scaffold_1025_curated_2
unknown

Not on your lists

1914..2222
DNA (309bp) protein (103aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1025_curated_3
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2225..3040
DNA (816bp) protein (272aa)
Probable RepA n=2 Tax=Xanthomonas axonopodis RepID=Q32XA6_9XANT
Putative RepA {ECO:0000313|EMBL:EWC49345.1}; TaxID=1401257 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. glycines str. 8ra.;"
RepA
scnpilot_solids1_trim150_scaffold_1025_curated_4
unknown

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3040..4032
DNA (993bp) protein (331aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1025_curated_5
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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4032..5123
DNA (1092bp) protein (364aa)
hypothetical protein EIN_312790 n=1 Tax=Entamoeba invadens IP1 RepID=UPI0002C3F162
Cell envelope protein TolA {ECO:0000313|EMBL:AHK78313.1}; TaxID=1354791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1025_curated_6
unknown

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5120..5647
DNA (528bp) protein (176aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1025_curated_7
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5634..6410
DNA (777bp) protein (259aa)
Conjugative transfer protein TrbJ n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2FZS5_BURVI
Conjugative transfer protein TrbJ {ECO:0000313|EMBL:ERJ36497.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1025_curated_8
unknown

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6419..6691
DNA (273bp) protein (91aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1025_curated_9
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7158..7421
DNA (264bp) protein (88aa)
Uncharacterized 9.0 kDa protein in mobE 3'region n=1 Tax=Acidithiobacillus ferrooxidans RepID=YME3_ACIFR
Uncharacterized 9.0 kDa protein in mobE 3'region; ORF 8; TaxID=920 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (Thiobacillus ferrooxidans).;"
putative Thioredoxin/glutaredoxin
scnpilot_solids1_trim150_scaffold_1025_curated_10
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7543..7956
DNA (414bp) protein (138aa)
Mercuric resistance operon regulatory protein (Fragment) n=1 Tax=Acidithiobacillus ferrooxidans RepID=MERR_ACIFR
Mercuric resistance operon regulatory protein; Flags: Fragment;; TaxID=920 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (Thiobacillus ferrooxidans).;"
MerR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_1025_curated_11
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8125..9339
DNA (1215bp) protein (405aa)
Major facilitator transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX4_9GAMM
Major Facilitator Superfamily protein {ECO:0000313|EMBL:AJZ56350.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
major facilitator transporter
scnpilot_solids1_trim150_scaffold_1025_curated_12
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9519..10079
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. TJI49 RepID=F0FY21_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGD05867.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
Resolvase domain protein
scnpilot_solids1_trim150_scaffold_1025_curated_13

Not on your lists

10082..13051
DNA (2970bp) protein (990aa)
Tn21 family transposase n=3 Tax=Bacteria RepID=G9FCA6_9BACT
Tn21 family transposase {ECO:0000313|EMBL:AEV57447.1}; Tn3 family transposase {ECO:0000313|EMBL:AEV57192.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
tnpA; Tn3 family transposase
scnpilot_solids1_trim150_scaffold_1025_curated_14
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13088..14743
DNA (1656bp) protein (552aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000378EB13
lipid A phosphoethanolamine transferase; K03760 phosphoethanolamine transferase
Tax=RBG_16_Gamma2_65_34_curated
scnpilot_solids1_trim150_scaffold_1025_curated_15
Pseudoalteromonas luteoviolacea, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14707..15609)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00037FA1C2
Uncharacterized protein {ECO:0000313|EMBL:CCQ10587.1}; TaxID=1268239 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas luteoviolacea B = ATCC 29581.;"
phosphoesterase PA-phosphatase-like protein
scnpilot_solids1_trim150_scaffold_1025_curated_16
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15953..17017
DNA (1065bp) protein (355aa)
TrbL/VirB6 plasmid conjugal transfer protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q120F0_POLSJ
TrbL/VirB6 plasmid conjugal transfer protein
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:ABE47092.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
scnpilot_solids1_trim150_scaffold_1025_curated_17
unknown

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17205..17435
DNA (231bp) protein (77aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1025_curated_18
unknown

Not on your lists

17432..17737
DNA (306bp) protein (102aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1025_curated_19
unknown

Not on your lists

17740..18072
DNA (333bp) protein (111aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1025_curated_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18069..19754
DNA (1686bp) protein (562aa)
Putative type IV secretory pathway VirD4 component n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHV9_THIDA
putative type IV secretory pathway VirD4 component
Putative type IV secretory pathway VirD4 component {ECO:0000313|EMBL:AAZ97774.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids1_trim150_scaffold_1025_curated_21
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19801..22476
DNA (2676bp) protein (892aa)
Conjugative relaxase domain protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIL4_ACIET
conjugative relaxase domain-containing protein
Conjugative relaxase domain protein {ECO:0000313|EMBL:ACM33030.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_1025_curated_22
unknown

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comp(22791..23174)
DNA (384bp) protein (128aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1025_curated_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23343..23762)
DNA (420bp) protein (140aa)
DNA mismatch endonuclease vsr; K07458 DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
T/G mismatch-specific endonuclease {ECO:0000313|EMBL:ABD08019.1}; EC=3.1.-.- {ECO:0000313|EMBL:ABD08019.1};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
T/G mismatch-specific endonuclease n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IUU1_RHOP2
scnpilot_solids1_trim150_scaffold_1025_curated_24
Achromobacter sp. LM16, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23770..25386)
DNA (1617bp) protein (539aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=1449778 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. LM16.;"
DNA-cytosine methyltransferase (EC:2.1.1.37); K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]
Cytosine-specific methyltransferase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDM7_ACISJ
scnpilot_solids1_trim150_scaffold_1025_curated_25
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25438..26463)
DNA (1026bp) protein (342aa)
Integrase n=1 Tax=Thauera sp. 63 RepID=N6Y7Z7_9RHOO
Phage integrase family protein {ECO:0000313|EMBL:CDW92473.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
site-specific recombinase, phage integrase family
scnpilot_solids1_trim150_scaffold_1025_curated_26
Rhodobacterales bacterium Y4I, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26814..27029
DNA (216bp) protein (72aa)
Transcriptional regulator, AlpA family n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6B6B2_9RHOB
Transcriptional regulator, AlpA family {ECO:0000313|EMBL:EDZ46947.1}; TaxID=439496 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales.;" source="Rhodobacterales bacterium Y4I.;"
scnpilot_solids1_trim150_scaffold_1025_curated_27

Not on your lists

27444..28067
DNA (624bp) protein (208aa)
KfrA n=1 Tax=uncultured bacterium RepID=G9FB76_9BACT
KfrA {ECO:0000313|EMBL:AEV57067.1}; KorB {ECO:0000313|EMBL:AEV56875.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1025_curated_28

Not on your lists

comp(28078..28431)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Janthinobacterium lividum RepID=UPI00028A04C8
Uncharacterized protein {ECO:0000313|EMBL:CBI09449.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Displaying 28 items

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