ggKbase | organisms

Consensus taxonomy: Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

Properties

Avg. coverage: 1.00 Longest contig: 8.95 Kbp Bin length: 1.31 Mbp GC content: 39.03 %

Contigs count: 814 Features count: 1669 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 BSCG 11 / 51 ASCG 2 / 38

Displaying items 301-350 of 814 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_34898_curated Species: Elizabethkingia miricola (50%)	2	1178 bp	32.51	1.00	55.77
scnpilot_solids1_trim150_scaffold_19341_curated Species: Fluviicola taffensis (50%)	2	1798 bp	40.88	1.00	86.10
scnpilot_solids1_trim150_scaffold_22723_curated Species: Elizabethkingia anophelis (50%)	2	1441 bp	38.24	1.00	58.71
scnpilot_solids1_trim150_scaffold_26359_curated Species: R_Fluviicola_43_260 (50%)	2	1444 bp	38.43	1.00	76.87
scnpilot_solids1_trim150_scaffold_35701_curated Species: Pontibacter korlensis (100%)	2	838 bp	46.18	1.00	78.76
scnpilot_solids1_trim150_scaffold_12396_curated Species: Elizabethkingia anophelis (50%)	2	2476 bp	39.58	1.00	87.12
scnpilot_solids1_trim150_scaffold_26087_curated Species: Chryseobacterium sp. JM1 (50%)	2	1421 bp	36.52	1.00	98.17
scnpilot_solids1_trim150_scaffold_30634_curated Species: Chryseobacterium sp. P1-3 (50%)	2	1064 bp	34.96	1.00	100.94
scnpilot_solids1_trim150_scaffold_37434_curated Species: RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated (50%)	2	1030 bp	38.54	1.00	80.97
scnpilot_solids1_trim150_scaffold_37694_curated Species: Flavobacterium psychrophilum (100%)	2	1003 bp	36.29	1.00	93.62
scnpilot_solids1_trim150_scaffold_37538_curated Species: Flavobacterium sp. 316 (50%)	2	1116 bp	34.95	1.00	84.68
scnpilot_solids1_trim150_scaffold_36301_curated Species: Tamlana sedimentorum (50%)	2	1109 bp	47.16	1.00	96.30
scnpilot_solids1_trim150_scaffold_29288_curated Species: Flavobacterium beibuense (100%)	2	1337 bp	42.26	1.00	64.17
scnpilot_solids1_trim150_scaffold_42439_curated Species: Flavobacterium sp. 316 (50%)	2	1019 bp	36.80	1.00	80.08
scnpilot_solids1_trim150_scaffold_27197_curated Species: Formosa agariphila (50%)	2	1411 bp	37.85	1.00	93.98
scnpilot_solids1_trim150_scaffold_31140_curated Species: Elizabethkingia meningoseptica (50%)	2	1279 bp	36.20	1.00	99.92
scnpilot_solids1_trim150_scaffold_27196_curated Species: Epilithonimonas sp. FH1 (50%)	2	2225 bp	33.98	1.00	44.09
scnpilot_solids1_trim150_scaffold_30134_curated Species: R_Fluviicola_43_260 (100%)	2	1310 bp	41.22	1.00	98.24
scnpilot_solids1_trim150_scaffold_28507_curated Species: Flavihumibacter solisilvae (50%)	2	1363 bp	38.30	1.00	73.73
scnpilot_solids1_trim150_scaffold_14841_curated Species: Flavobacterium johnsoniae (50%)	2	2109 bp	41.06	1.00	46.23
scnpilot_solids1_trim150_scaffold_30131_curated Species: Flavobacteria bacterium BAL38 (50%)	2	1310 bp	37.40	1.00	96.18
scnpilot_solids1_trim150_scaffold_33755_curated Species: Fluviicola taffensis (50%)	2	1105 bp	38.82	1.00	80.91
scnpilot_solids1_trim150_scaffold_34185_curated Species: Myroides profundi (50%)	2	1195 bp	30.46	1.00	97.41
scnpilot_solids1_trim150_scaffold_25676_curated Species: Elizabethkingia miricola (100%)	2	1472 bp	38.52	1.00	99.05
scnpilot_solids1_trim150_scaffold_7399_curated Species: Formosa sp. AK20 (50%)	2	3605 bp	38.78	1.00	95.78
scnpilot_solids1_trim150_scaffold_43282_curated Species: Riemerella anatipestifer (50%)	2	1004 bp	51.59	1.00	97.11
scnpilot_solids1_trim150_scaffold_28468_curated Species: Chryseobacterium oranimense (50%)	2	1364 bp	42.01	1.00	86.44
scnpilot_solids1_trim150_scaffold_14825_curated Species: Leadbetterella byssophila (50%)	2	1885 bp	40.90	1.00	70.03
scnpilot_solids1_trim150_scaffold_30876_curated Species: R_Fluviicola_43_260 (50%)	2	1174 bp	36.12	1.00	89.69
scnpilot_solids1_trim150_scaffold_24844_curated Species: R_Fluviicola_43_260 (50%)	2	1506 bp	40.77	1.00	87.65
scnpilot_solids1_trim150_scaffold_34233_curated Species: Saprospira grandis (50%)	2	1169 bp	37.55	1.00	90.33
scnpilot_solids1_trim150_scaffold_40725_curated Species: Flavobacterium limnosediminis (50%)	2	956 bp	40.69	1.00	97.59
scnpilot_solids1_trim150_scaffold_14042_curated Species: Chryseobacterium gleum (100%)	2	2159 bp	34.00	1.00	96.02
scnpilot_solids1_trim150_scaffold_42974_curated Species: Chryseobacterium formosense (50%)	2	1009 bp	40.04	1.00	92.17
scnpilot_solids1_trim150_scaffold_35181_curated Species: Zhouia amylolytica (50%)	2	1162 bp	42.77	1.00	98.88
scnpilot_solids1_trim150_scaffold_23912_curated Species: Flavobacterium branchiophilum (50%)	2	1559 bp	38.29	1.00	90.64
scnpilot_solids1_trim150_scaffold_18504_curated Species: Flavobacterium enshiense (50%)	2	1854 bp	44.61	1.00	93.69
scnpilot_solids1_trim150_scaffold_10794_curated Species: R_Fluviicola_43_260 (50%)	2	2641 bp	37.45	1.00	87.35
scnpilot_solids1_trim150_scaffold_22713_curated Species: R_Fluviicola_43_260 (50%)	2	1429 bp	43.88	1.00	93.00
scnpilot_solids1_trim150_scaffold_17203_curated Species: R_Fluviicola_43_260 (50%)	2	1950 bp	40.72	1.00	76.15
scnpilot_solids1_trim150_scaffold_14991_curated Species: Flavobacterium sp. F52 (50%)	2	2144 bp	37.31	1.00	60.45
scnpilot_solids1_trim150_scaffold_39885_curated Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	1066 bp	36.59	1.00	100.19
scnpilot_solids1_trim150_scaffold_42725_curated Species: R_Fluviicola_43_260 (50%)	2	988 bp	38.97	1.00	77.43
scnpilot_solids1_trim150_scaffold_21741_curated Species: Elizabethkingia miricola (100%)	2	1622 bp	38.96	1.00	99.69
scnpilot_solids1_trim150_scaffold_28692_curated Species: Flavobacterium indicum (50%)	2	1279 bp	35.50	1.00	87.72
scnpilot_solids1_trim150_scaffold_9786_curated Species: Flavobacterium sp. 316 (50%)	2	2917 bp	36.92	1.00	89.06
scnpilot_solids1_trim150_scaffold_20899_curated Species: R_Fluviicola_43_260 (100%)	2	1703 bp	41.81	1.00	98.83
scnpilot_solids1_trim150_scaffold_35793_curated Species: Capnocytophaga cynodegmi (50%)	2	1155 bp	35.32	1.00	93.25
scnpilot_solids1_trim150_scaffold_33663_curated Species: Chryseobacterium piperi (50%)	2	1208 bp	30.46	1.00	99.59
scnpilot_solids1_trim150_scaffold_37749_curated Species: Chryseobacterium sp. CF314 (50%)	2	1032 bp	41.38	1.00	98.84

Displaying items 301-350 of 814 in total

solids_Flavobacteriales_1

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_39_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Flavobacteriales_1

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_39_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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