ggKbase home page

scnpilot_solids1_trim150_scaffold_827_curated

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_827_curated_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

516..839
DNA (324bp) protein (108aa)
Cytochrome c553 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSP1_9GAMM
Cytochrome c553 {ECO:0000313|EMBL:EIL90232.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cytochrome c553
scnpilot_solids1_trim150_scaffold_827_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

858..1214
DNA (357bp) protein (119aa)
Cytochrome c553 n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH0_9GAMM
cytochrome c553
Cytochrome c553 {ECO:0000313|EMBL:AGG88962.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_827_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1298..1906)
DNA (609bp) protein (203aa)
Fe/S biogenesis protein NfuA n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6T5_9GAMM
Fe/S biogenesis protein NfuA {ECO:0000256|HAMAP-Rule:MF_01637, ECO:0000256|SAAS:SAAS00035357}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
thioredoxin-like protein
scnpilot_solids1_trim150_scaffold_827_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2033..2374
DNA (342bp) protein (114aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
pterin-4a-carbinolamine dehydratase (EC:4.2.1.96)
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI71_9GAMM
scnpilot_solids1_trim150_scaffold_827_curated_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2331..3362)
DNA (1032bp) protein (344aa)
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDY9_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_827_curated_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3701..6838
DNA (3138bp) protein (1046aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Ribonuclease E n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI69_9GAMM
ribonuclease, Rne/Rng family
scnpilot_solids1_trim150_scaffold_827_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6937..7590)
DNA (654bp) protein (218aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Rhodanobacter denitrificans RepID=I4WXG5_9GAMM
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EIL99159.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
scnpilot_solids1_trim150_scaffold_827_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8101..13209)
DNA (5109bp) protein (1703aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037937D0
Uncharacterized protein {ECO:0000313|EMBL:AKH43017.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_827_curated_9
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13594..14196
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHD8_GLUDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI52508.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
scnpilot_solids1_trim150_scaffold_827_curated_10
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14196..15512
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHD9_GLUDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI52509.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
scnpilot_solids1_trim150_scaffold_827_curated_11
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15557..16933
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHE0_GLUDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI52510.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
scnpilot_solids1_trim150_scaffold_827_curated_12
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17128..18315)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0KD97_CUPNH
h16_A0877; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ92024.1}; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
scnpilot_solids1_trim150_scaffold_827_curated_13
Xanthomonas alfalfae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18451..19806)
DNA (1356bp) protein (452aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas axonopodis pv. citrumelo F1 RepID=G2LRE6_9XANT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEO43421.1}; TaxID=981368 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. citrumelo F1.;"
scnpilot_solids1_trim150_scaffold_827_curated_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20301..20543)
DNA (243bp) protein (81aa)
DNA repair protein RadC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV19_9GAMM
DNA repair protein RadC {ECO:0000313|EMBL:EIM03311.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA repair protein
Displaying 14 items

View Taxonomy