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scnpilot_solids1_trim150_scaffold_824_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_824_curated_1
unknown

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2..166
DNA (165bp) protein (55aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_824_curated_2
unknown

Not on your lists

239..388
DNA (150bp) protein (50aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_824_curated_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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740..1390
DNA (651bp) protein (217aa)
Pyridoxamine 5'-phosphate oxidase; K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7J7_NIAKG
scnpilot_solids1_trim150_scaffold_824_curated_4
unknown

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comp(1392..1517)
DNA (126bp) protein (42aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_824_curated_5
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1602..1871)
DNA (270bp) protein (90aa)
Histone family protein DNA-binding protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7J5_NIAKG
Transcriptional regulator HU subunit alpha {ECO:0000313|EMBL:KIC95229.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta
scnpilot_solids1_trim150_scaffold_824_curated_6
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2159..2464)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KPM3_HALH1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE50961.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
scnpilot_solids1_trim150_scaffold_824_curated_7
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2468..3235)
DNA (768bp) protein (256aa)
exodeoxyribonuclease III Xth; K01142 exodeoxyribonuclease III [EC:3.1.11.2]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000377503A
Exodeoxyribonuclease III {ECO:0000313|EMBL:KIC91251.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
scnpilot_solids1_trim150_scaffold_824_curated_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3292..6060)
DNA (2769bp) protein (923aa)
methionine synthase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
Methionine synthase (B12-dependent) {ECO:0000313|EMBL:AEW02245.1}; EC=2.1.1.13 {ECO:0000313|EMBL:AEW02245.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
methionine synthase n=1 Tax=Segetibacter koreensis RepID=UPI000370C780
scnpilot_solids1_trim150_scaffold_824_curated_9
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

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comp(6029..6574)
DNA (546bp) protein (182aa)
Putative uncharacterized protein id=2107156 bin=GWE2_Bacteroidetes_40_63 species=Gramella forsetii genus=Gramella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_63 organism_group=Bacteroidetes organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
scnpilot_solids1_trim150_scaffold_824_curated_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(6850..7923)
DNA (1074bp) protein (358aa)
5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Segetibacter koreensis RepID=UPI000382B986
methionine synthase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_824_curated_11
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(7923..9095)
DNA (1173bp) protein (391aa)
Na+/H+ antiporter NhaA n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SHF6_9FLAO
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;"
nhaA; Na+/H+ antiporter; K03313 Na+:H+ antiporter, NhaA family
scnpilot_solids1_trim150_scaffold_824_curated_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9433..11043)
DNA (1611bp) protein (537aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000365CA7A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02467.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_824_curated_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(11109..12596)
DNA (1488bp) protein (496aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase n=1 Tax=Niabella soli DSM 19437 RepID=H1NT13_9SPHI
scnpilot_solids1_trim150_scaffold_824_curated_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12703..13836)
DNA (1134bp) protein (378aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Niabella soli DSM 19437 RepID=H1NT12_9SPHI
endonuclease/exonuclease/phosphatase
Uncharacterized protein {ECO:0000313|EMBL:AHF17834.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_solids1_trim150_scaffold_824_curated_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13881..14810)
DNA (930bp) protein (310aa)
Rhomboid family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7N9_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC91197.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
rhomboid family protein
scnpilot_solids1_trim150_scaffold_824_curated_16
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14883..15494)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035E51BA
Uncharacterized protein {ECO:0000313|EMBL:KIC91196.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
transmembrane rhomboid family protein
scnpilot_solids1_trim150_scaffold_824_curated_17
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15602..16816)
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036FE445
Glycosyl transferase family 2 {ECO:0000313|EMBL:AHW61351.1}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
putative glycosyltransferase
scnpilot_solids1_trim150_scaffold_824_curated_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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16930..17850
DNA (921bp) protein (307aa)
inositol-phosphate phosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Inositol-phosphate phosphatase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCK3_NIAKG
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_824_curated_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17932..19017
DNA (1086bp) protein (362aa)
aminomethyltransferase; K00605 aminomethyltransferase [EC:2.1.2.10]
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
glycine cleavage system protein T n=1 Tax=Segetibacter koreensis RepID=UPI00035FC395
scnpilot_solids1_trim150_scaffold_824_curated_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19061..19801
DNA (741bp) protein (247aa)
2-phosphosulfolactate phosphatase; K05979 2-phosphosulfolactate phosphatase [EC:3.1.3.71]
Probable 2-phosphosulfolactate phosphatase {ECO:0000256|HAMAP-Rule:MF_00490}; EC=3.1.3.71 {ECO:0000256|HAMAP-Rule:MF_00490};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
2-phosphosulfolactate phosphatase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF34_NIAKG
scnpilot_solids1_trim150_scaffold_824_curated_21
Psychroflexus gondwanensis, Psychroflexus, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19847..20536)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Psychroflexus gondwanensis ACAM 44 RepID=N1WRI7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EMY81605.1}; TaxID=1189619 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Psychroflexus.;" source="Psychroflexus gondwanensis ACAM 44.;"
hypothetical protein
Displaying 21 items

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