ggKbase home page

scnpilot_solids1_trim150_scaffold_126_curated

Search features with annotation key words

Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_126_curated_1
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..347)
DNA (345bp) protein (115aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
sucD; succinyl-CoA synthetase subunit alpha (EC:6.2.1.5); K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
succinyl-CoA synthetase subunit alpha n=1 Tax=Xanthomonas sacchari RepID=UPI000262A8A3
scnpilot_solids1_trim150_scaffold_126_curated_2
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(529..1701)
DNA (1173bp) protein (391aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
Succinyl-CoA ligase [ADP-forming] subunit beta n=2 Tax=Stenotrophomonas maltophilia RepID=M5TI24_STEMA
scnpilot_solids1_trim150_scaffold_126_curated_3
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1962..3575
DNA (1614bp) protein (538aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
pilS; Two-component sensor PilS; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
ATPase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D8D1BC
scnpilot_solids1_trim150_scaffold_126_curated_4
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3639..5006
DNA (1368bp) protein (456aa)
chemotaxis protein CheY n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003168A34
Chemotaxis protein CheY {ECO:0000313|EMBL:AHY57951.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hydG; Type IV fimbriae expression regulatory protein PilR; K02667 two-component system, NtrC family, response regulator PilR
scnpilot_solids1_trim150_scaffold_126_curated_5
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5209..7131)
DNA (1923bp) protein (641aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CDN52677.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
Signal transduction histidine kinase n=1 Tax=Rhizobium sp. CF080 RepID=J3C370_9RHIZ
putative sensor histidine kinase
scnpilot_solids1_trim150_scaffold_126_curated_6
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7135..8511)
DNA (1377bp) protein (459aa)
Conserved hypothetical signaling protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1KBS5_AZOSB
putative signaling protein
Conserved hypothetical signaling protein {ECO:0000313|EMBL:CAL96281.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
scnpilot_solids1_trim150_scaffold_126_curated_7
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8462..9340)
DNA (879bp) protein (293aa)
Conserved hypothetical signaling protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1KBS5_AZOSB
putative signaling protein
Conserved hypothetical signaling protein {ECO:0000313|EMBL:CAL96281.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
scnpilot_solids1_trim150_scaffold_126_curated_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9611..11341)
DNA (1731bp) protein (577aa)
Type IV fimbrial assembly, ATPase PilB n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KS35_STEMA
pilB; Type IV fimbrial assembly, ATPase PilB; K02652 type IV pilus assembly protein PilB
Type IV fimbrial assembly, ATPase PilB {ECO:0000313|EMBL:CCH13876.1}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
scnpilot_solids1_trim150_scaffold_126_curated_9
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11558..12487)
DNA (930bp) protein (310aa)
UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002D2E65C
UDP-galactose-4-epimerase {ECO:0000313|EMBL:KGM54330.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
scnpilot_solids1_trim150_scaffold_126_curated_10
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12671..13528
DNA (858bp) protein (286aa)
Glycosyl transferase family 2 n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4ST76_STRM5
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACF52867.1}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
scnpilot_solids1_trim150_scaffold_126_curated_11
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13564..14364
DNA (801bp) protein (267aa)
Uncharacterized protein n=2 Tax=Rhodospirillum rubrum RepID=Q2RSH2_RHORT
NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ97421.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_126_curated_12
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14361..15302
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AI74_COLFT
NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ97420.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
hypothetical protein; K07027
scnpilot_solids1_trim150_scaffold_126_curated_13
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15299..16147
DNA (849bp) protein (283aa)
putative glycosyltransferase (EC:2.1.1.64)
Putative glycosyltransferase n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AI73_COLFT
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_solids1_trim150_scaffold_126_curated_14
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16140..17309
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00036F19FF
group 1 glycosyl transferase
Tax=RBG_16_Betaproteobacteria_56_24_curated
scnpilot_solids1_trim150_scaffold_126_curated_15
Acinetobacter sp. HR7, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17403..19280)
DNA (1878bp) protein (626aa)
hypothetical protein n=1 Tax=Pseudomonas caeni RepID=UPI0003B497F5
Uncharacterized protein {ECO:0000313|EMBL:KGT48276.1}; TaxID=1509403 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. HR7.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_126_curated_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19390..19776)
DNA (387bp) protein (129aa)
Pilus assembly protein PilA id=1336253 bin=GWE1_T_denit_62_9 species=gamma proteobacterium HTCC5015 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
methylation site containing protein; K02650 type IV pilus assembly protein PilA
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids1_trim150_scaffold_126_curated_17
gamma proteobacterium HTCC5015, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19864..20211)
DNA (348bp) protein (116aa)
Pilus assembly protein PilA n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JXH1_9GAMM
Pilus assembly protein PilA {ECO:0000313|EMBL:EDY85681.1}; TaxID=391615 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HTCC5015.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_126_curated_18
unknown

Not on your lists

comp(20223..20330)
DNA (108bp) protein (36aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_126_curated_19
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20651..21910
DNA (1260bp) protein (420aa)
Fimbrial assembly protein n=3 Tax=Xanthomonas RepID=U4LZ72_9XANT
PilC, fimbrial assembly protein {ECO:0000313|EMBL:EFF46697.1}; TaxID=427082 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535.;"
pilC; fimbrial assembly protein; K02653 type IV pilus assembly protein PilC
scnpilot_solids1_trim150_scaffold_126_curated_20
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21918..22781
DNA (864bp) protein (288aa)
prepilin peptidase (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
Type 4 prepilin-like proteins leader peptide-processing enzyme {ECO:0000256|RuleBase:RU003794}; EC=2.1.1.- {ECO:0000256|RuleBase:RU003794};; EC=3.4.23.43 {ECO:0000256|RuleBase:RU003794};; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
N-methyltransferase n=1 Tax=Pseudomonas geniculata RepID=UPI00029ABC8D
scnpilot_solids1_trim150_scaffold_126_curated_21
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22828..23451
DNA (624bp) protein (208aa)
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24]
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
Dephospho-CoA kinase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K0R0_STEMA
scnpilot_solids1_trim150_scaffold_126_curated_22
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23487..24824)
DNA (1338bp) protein (446aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
Two-component system sensor histidine kinase n=4 Tax=Xanthomonas campestris RepID=B0RPP5_XANCB
two-component system sensor protein
scnpilot_solids1_trim150_scaffold_126_curated_23
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24817..25494)
DNA (678bp) protein (226aa)
XRE family transcriptional regulator n=1 Tax=Xanthomonas sacchari RepID=UPI000262AA26
XRE family transcriptional regulator {ECO:0000313|EMBL:AJC47748.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
two-component system response regulator protein
scnpilot_solids1_trim150_scaffold_126_curated_24
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25661..26131)
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQ97_PSEUU
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV26346.1}; Flags: Precursor;; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_126_curated_25
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26342..27217)
DNA (876bp) protein (292aa)
Probable alpha-L-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_01552}; EC=6.3.2.- {ECO:0000256|HAMAP-Rule:MF_01552};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
ribosomal protein S6 modification protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E01A1D
alpha-L-glutamate ligase; K05844 ribosomal protein S6 modification protein
scnpilot_solids1_trim150_scaffold_126_curated_26
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27502..29343)
DNA (1842bp) protein (614aa)
outer membrane autotransporter barrel domain-containing protein (EC:3.1.1.1); K12686 outer membrane lipase/esterase
lipase/esterase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000307B278
Esterase {ECO:0000313|EMBL:AHY57936.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
scnpilot_solids1_trim150_scaffold_126_curated_27
Xanthomonas oryzae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29482..29682
DNA (201bp) protein (67aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Xanthomonas oryzae pv. oryzicola BLS256 RepID=G7TEB9_9XANT
thiS; thiamine biosynthesis protein ThiS; K03154 sulfur carrier protein
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:AJQ86515.1}; TaxID=129394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas oryzae pv. oryzicola.;"
scnpilot_solids1_trim150_scaffold_126_curated_28
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29754..30620
DNA (867bp) protein (289aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
thiazole synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031FB91C
thiG; Thiazole biosynthesis protein ThiG; K03149 thiamine biosynthesis ThiG
scnpilot_solids1_trim150_scaffold_126_curated_29
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30620..31354
DNA (735bp) protein (245aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
tRNA (guanine-N(7)-)-methyltransferase; K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TYH4_STEMA
scnpilot_solids1_trim150_scaffold_126_curated_30
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31380..33227
DNA (1848bp) protein (616aa)
TrkA-C domain-containing protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TI49_STEMA
TrkA-C domain-containing protein {ECO:0000313|EMBL:EZP47086.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
TrkA-C domain-containing protein
Displaying items 1-30 of 80 in total

View Taxonomy