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scnpilot_solids1_trim150_scaffold_1808_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1808_curated_1
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..232
DNA (231bp) protein (77aa)
hypothetical protein, partial n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003662B18
Uncharacterized protein {ECO:0000313|EMBL:KGM52486.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
dienelactone hydrolase-related enzyme
scnpilot_solids1_trim150_scaffold_1808_curated_2
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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236..805
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WUX6_PSEUU
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV27975.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_1808_curated_3
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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833..1666
DNA (834bp) protein (278aa)
peptidase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002DBDBD1
Peptidase {ECO:0000313|EMBL:KGM57167.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin
scnpilot_solids1_trim150_scaffold_1808_curated_4
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1682..2578)
DNA (897bp) protein (299aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133); K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
dTDP-4-dehydrorhamnose reductase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F159DA
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:AKC87447.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
scnpilot_solids1_trim150_scaffold_1808_curated_5
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3132..4034)
DNA (903bp) protein (301aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
Glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
glucose-1-phosphate thymidylyltransferase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B3F6A8
scnpilot_solids1_trim150_scaffold_1808_curated_6
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4031..5086)
DNA (1056bp) protein (352aa)
dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WW74_PSEUU
scnpilot_solids1_trim150_scaffold_1808_curated_7
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5321..5677)
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UR83_PSEUP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AER55894.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
scnpilot_solids1_trim150_scaffold_1808_curated_8
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5670..5972)
DNA (303bp) protein (101aa)
Integration host factor subunit alpha n=11 Tax=Stenotrophomonas RepID=IHFA_STRM5
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha
scnpilot_solids1_trim150_scaffold_1808_curated_9
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5985..8369)
DNA (2385bp) protein (795aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase beta subunit n=2 Tax=Xanthomonas campestris pv. campestris RepID=SYFB_XANC8
scnpilot_solids1_trim150_scaffold_1808_curated_10
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8379..9389)
DNA (1011bp) protein (337aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
phenylalanyl-tRNA synthetase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E0A5D7
scnpilot_solids1_trim150_scaffold_1808_curated_11
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9548..9907)
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00030B8E16
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1808_curated_12
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9919..10116)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=24 Tax=Xanthomonas RepID=RL35_XANAC
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
scnpilot_solids1_trim150_scaffold_1808_curated_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10442..10768)
DNA (327bp) protein (109aa)
Translation initiation factor IF-3 n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L4K4_9GAMM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3
Displaying 13 items

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