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SCN18_14_9_16_R2_B_scaffold_900_8

Organism: SCN18_14_9_16_R2_B_Alphaproteobacteria_64_15

near complete RP 39 / 55 BSCG 51 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 4865..9034

Top 3 Functional Annotations

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Value Algorithm Source
rpoB; RNA polymerase, beta subunit (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 77.0
  • Coverage: 1390.0
  • Bit_score: 2150
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.0
  • Coverage: 1390.0
  • Bit_score: 2150
  • Evalue 0.0
RNA polymerase, beta subunit n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EVM7_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 77.0
  • Coverage: 1390.0
  • Bit_score: 2150
  • Evalue 0.0

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Taxonomy

Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120 → Magnetospirillum → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4170
ATGGCCACGGCCTTCAATACGCGCAAACGGATTCGTCGTTTCTTCGGCCACATCGAGTCAGTGGCGCCGATGCCCAACCTCATCGAAGTGCAGAAGAGCTCCTACGAGAGCTTCCTGCAGCGCATGACTCCGGCCGCCAGGCGCACGCAATCCGGCCTTCAGGAAGTCTTCCGCTCGGTGTTTCCGATCAAGGATTTCGCCGAGCGCGCCAGCCTAGAATTCGTGAAGTACGAGTTCGAGGAGCCGAAGTACGACGTCGAGGAGTGCCAGCAGCGCGGCATCACCTACGCCGCCCCGCTCAAGGTCACCCTGCAGCTCGTGGTGTGGGACATAGACGAGGAAGCAGGCTCGCGCTCGATCCGCGATATCAAGGAGCAGGATGTCTACATGGGCGACATGCCGCTCATGACCGACAACGGCACCTTCATCGTTAACGGCACTGAGCGCGTGATCGTGAGCCAGATGCACCGCTCGCCGGGTGTCTTCTTCGATCACGACAAGGGCAAGACCCACAGCTCGGGCAAGTACCTCTATGCCGCCCGCATCATTCCCTATCGTGGCTCGTGGCTCGACTTCGAGTTCGACGCCAAGGATCTGATCCACGTGCGCATTGACCGTCGCCGCAAGATCCCGGTGACGACGCTCCTGCTCGCGCTCGACAACGACGCCACGCATAAGAAGCGGCTGGCAGCGATCGCCAAGGGCCAGCAGCTCGATCCGGCCGAGGCGCAGGGCCTGTCGCCGGAAGAGATCCTCGCCGCGTTCTATGGCCAGGTCGTCTACAAGCGCGACAAGGAAGGCTGGAACACAGGCTTCGACGCCGACGCGATGAAGGGCCTGAAGCTCACGCACGACCTCGTCAATGCCAAGACCGGCAAGACGGCGGCCGATGCCGGCGCCAAGATGACGCCGCGGCTGCTTGCCCGCCTCAAGGAGGCCGGGCTGAAGGAAATCCGCGTCCTGCCCGAAGAGCTGATCGGCCGCTACGCCGCGCTCGACGTCATCAACGAGAAGACGGGCGAGATCTATGTCGAGGCAGGCCAGGAGATCACCCAGGCCGTTCTTGACCTCTTCGAGAAGAACGGCATCGACACGCTGCCGACGCTCGCGATCGATCACACCAATATCGGCCCCTACATCCGCAATACGCTGGCAGCCGACAAGAACAACAACCGCGAGGAAGCGCTGCTCGACATCTACCGCGTGATGCGGCCGGGCGAGCCGCCGACGCTGGAGCAGGCGGAGACGCTGTTTGGCGGCCTCCTGTTCGATATCGAGCGCTACGACCTCTCGCCCGTGGGCCGCGTGAAGATGAACATGCGGCTGGGCTTCGAGGGTGTGCCCGACACGCAGCGCACGTTGCGCCGCGAGGATATCCTCTCGGTGGTCAAGGTCCTGCACGGCCTCAAGGACGGCCACGGCGACATCGACGACATCGACAATCTCGGCAATCGCCGCGTCCGGTCGGTCGGCGAGCTGATGGAGAACCAGTATCGCGTTGGCCTGCTCCGCATGGAGCGCGCCATCCGCGAGCGCATGAGCTCGATCGACATCGACACCGTGATGCCGCACGACCTCATCAACGCCAAGCCGGCGGCCGCCGCGGTGCGCGAGTTCTTCGGCTCGAGCCAGCTCTCGCAGTTCATGGACCAGACCAACCCGCTGTCGGAAGTGACGCACAAGCGCCGCCTCTCCGCGCTGGGACCGGGCGGCCTGACGCGCGAGCGTGCGGGCTTCGAGGTGCGCGACGTGCATCCCACGCACTACGGCCGCATCTGTCCGATCGAGACACCGGAAGGGCCGAACATCGGCCTGATCAACTCGCTCGCGACCTATGCGCGCGTGAATCAATACGGCTTCATCGAGAGCCCGTACCGCAAGGTTGCCCACAGCCGCGTCAGCGACGAGGTGATCTATCTCTCGGCGATGGAGGAGAGCCGCTACACGGTGGCCCAGGCCAACGCCGAGATCGATTCCAAGGGCAAGTTCGCCTCCGAGCTGGTGCAGTGCCGCAAGGGCGGTGAGTACATCCTCGCCCGGCCCGAGACGATCGACTTCGTCGACGTCTCGCCCAAGCAGATCGTGTCGGTCGCCGCGGCGCTGATCCCGTTCCTCGAGAACGACGACGCCAACCGCGCGCTGATGGGCTCCAACATGCAGCGTCAGGCGGTGCCGCTGATCCAGGCCGAATCGCCGCTGGTCGGCACCGGCATGGAAGAGGTGGTGGCGCGCGACTCGGGCGTGGCGATCGCTGCGCGCCGCACCGGCGTGGTCGACCAGGTCGACGCCATGCGCATAGTCGTGCGCGCGACCGACGATGTCGGTCCCAATCGGCCCGCGGTCGACATCTACAATCTCTTGAAGTTCCAACGCTCCAACCAGAGCACCTGCATCACCCAGAAGCCGCTGGTGAAGGTCGGCGATCAGGTGAAGAAGGGCGACATCGTGGCCGATGGTCCGTCGACCCGCGATGGCGAGCTGGCGCTCGGCCGCAACGTGCTGGTCGCGTTCATGCCGTGGAACGGCTACAACTTCGAGGACTCGATCCTGCTCTCCGAGCGCATCGTCCGCGATGACGTCTTCACCTCGATCCATATCGAGGAGTTCGAAGTCATGGCGCGCGACACCAAGCTTGGCCAGGAGGAGATCAGCCGCGACATCCCGAACGTCGGCGAAGAAGCCCTCAAGAACCTGGACGAGGCCGGCATCGTCTATATCGGCGCCGAGGTGAAGGCGGGCGACATCCTGGTCGGCAAGGTGACGCCGAAGGGCGAGAGCCCGATGACGCCGGAAGAGAAGCTCCTGCGCGCGATCTTCGGCGAAAAGGCTGCCGACGTGCGCGACACCTCGCTCAAGGTGCCGCCGGGCGTCGAAGGCACGGTGGTCGAGGTGCGCGTCTTCAACCGCCGCGGCGTCGACAAGGACGAGCGTGCGCTCGCCATCGAGCGCGACGAGATCGAGCGCCTGGCCAAGGACCGAGACGACGAAAAGGCGATCCTGGAACGCAGCTTCTACGGCCAGATCCAGGAAATGCTGATGAACCAGACCGTGGCCGGTGGTCTGAAGGGCCTCAAGCCCGGCACGCGGATCACTGACAAGGTTCTGGGCGAGTTCACGCCCGGACAGTGGCGTCAGATCGCGGTCAAGACCGACAAGCGGCAGGGCGAGATCGAGGCATCGAACAAGCAGTTCGACGAGTCGATGAAGCGCCTGCAGGATCGATTCGACAGCAAGGTCGACAAGCTGCAGCGCGGCGACGAGCTGCCGCCGGGCGTCATGAAGATGGTCAAGGTCTTCGTCGCGACCAAGCGCAAGCTGCAGCCGGGCGACAAGATGGCCGGCCGTCACGGCAACAAGGGCGTGATCTCGCGCATCATGCCGCTCGAGGACATGCCGTACCTCGAGGACGGCACGCCGGTCGACATCGTGCTGAACCCGCTCGGCGTGCCGAGCCGCATGAACGTCGGTCAGATCCTGGAGACCCACCTCGGCTGGGCCGCGGCGGGTCTCGGCAGGAAGATCGGCGAGATGGTGAACGGCGCGCGCGACTCGTCGGTGGCGCAGGTCCGCAAGACCCTGCGCGAGGTCTATGGCGAGAAGTCCTACAAGGCCGACATCGCCGATCTCGACGATGACCGCGTGGTCGAGCTCGCCCGGAACCTAAGCCGCGGCGTTCCGTTTGCCTCGCCGGTGTTCGATGGCGCGCACGAGGCCGACATCGTCGGCATGCTCGACATGGCGGGCCTCGACAAGTCGGGCCAGGTGACCTTGGTCGATGGTCGCACCGGCGAACCGTTCGATCGCAAGGTGACGGTGGGCTACATCTACATGCTGAAGCTGCATCATCTGGTGGACGACAAGATCCACGCGCGCTCGATCGGCCCGTACAGCCTGGTCACCCAGCAGCCGCTGGGCGGCAAGGCGCAGTTCGGCGGCCAGCGCTTCGGCGAGATGGAGGTGTGGGCGCTCGAGGCCTATGGCGCCGCCTACACGCTGCAGGAGATCCTGACCGTCAAGTCGGACGACGTGGCCGGTCGTACCAAGGTCTACGAGGCCATCGTGCGCGGCGACGACACGTTCGAGGCGGGTATCCCCGAGTCCTTCAATGTGCTGGTCAAGGAGCTTCGCTCGCTCGGCCTCAATGTCGAACTCAACCAGTCGGCCTCGTGA
PROTEIN sequence
Length: 1390
MATAFNTRKRIRRFFGHIESVAPMPNLIEVQKSSYESFLQRMTPAARRTQSGLQEVFRSVFPIKDFAERASLEFVKYEFEEPKYDVEECQQRGITYAAPLKVTLQLVVWDIDEEAGSRSIRDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLYAARIIPYRGSWLDFEFDAKDLIHVRIDRRRKIPVTTLLLALDNDATHKKRLAAIAKGQQLDPAEAQGLSPEEILAAFYGQVVYKRDKEGWNTGFDADAMKGLKLTHDLVNAKTGKTAADAGAKMTPRLLARLKEAGLKEIRVLPEELIGRYAALDVINEKTGEIYVEAGQEITQAVLDLFEKNGIDTLPTLAIDHTNIGPYIRNTLAADKNNNREEALLDIYRVMRPGEPPTLEQAETLFGGLLFDIERYDLSPVGRVKMNMRLGFEGVPDTQRTLRREDILSVVKVLHGLKDGHGDIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSIDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYARVNQYGFIESPYRKVAHSRVSDEVIYLSAMEESRYTVAQANAEIDSKGKFASELVQCRKGGEYILARPETIDFVDVSPKQIVSVAAALIPFLENDDANRALMGSNMQRQAVPLIQAESPLVGTGMEEVVARDSGVAIAARRTGVVDQVDAMRIVVRATDDVGPNRPAVDIYNLLKFQRSNQSTCITQKPLVKVGDQVKKGDIVADGPSTRDGELALGRNVLVAFMPWNGYNFEDSILLSERIVRDDVFTSIHIEEFEVMARDTKLGQEEISRDIPNVGEEALKNLDEAGIVYIGAEVKAGDILVGKVTPKGESPMTPEEKLLRAIFGEKAADVRDTSLKVPPGVEGTVVEVRVFNRRGVDKDERALAIERDEIERLAKDRDDEKAILERSFYGQIQEMLMNQTVAGGLKGLKPGTRITDKVLGEFTPGQWRQIAVKTDKRQGEIEASNKQFDESMKRLQDRFDSKVDKLQRGDELPPGVMKMVKVFVATKRKLQPGDKMAGRHGNKGVISRIMPLEDMPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGWAAAGLGRKIGEMVNGARDSSVAQVRKTLREVYGEKSYKADIADLDDDRVVELARNLSRGVPFASPVFDGAHEADIVGMLDMAGLDKSGQVTLVDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKELRSLGLNVELNQSAS*