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SCN18_14_9_16_R2_B_scaffold_900

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R2_B_scaffold_900_1
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1195
DNA (1194bp) protein (398aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=2 Tax=Phaeospirillum RepID=H8FNC6_PHAMO
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
SCN18_14_9_16_R2_B_scaffold_900_trna_1
unknown

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1224..1296
DNA (73bp)
transferRNA Trp
SCN18_14_9_16_R2_B_scaffold_900_2
SCNPILOT_EXPT_1000_BF_Rhodospirillales_43_39, SCNPILOT_EXPT_1000_BF_Rhodospirillales_43_39, SCNPILOT_EXPT_1000_BF_Rhodospirillales_43_39, Alphaproteobacteria, Proteobacteria, Bacteria

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1317..1508
DNA (192bp) protein (64aa)
preprotein translocase subunit SecE n=1 Tax=Xanthobacteraceae RepID=UPI00037E2715
preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCN18_14_9_16_R2_B_scaffold_900_3
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1510..2046
DNA (537bp) protein (179aa)
Transcription termination/antitermination protein NusG n=2 Tax=Rhodospirillum rubrum RepID=G2T788_RHORU
nusG; transcription antitermination protein NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCN18_14_9_16_R2_B_scaffold_900_4
Candidatus Caedibacter acanthamoebae_SCNPILOT_EXPT_500_P_Alphaproteobacteria_36_9_partial, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2256..2684
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=Singularimonas variicoloris RepID=UPI000373E472
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
rplK; 50S ribosomal protein L11
SCN18_14_9_16_R2_B_scaffold_900_5
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2688..3383
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=RL1_RHOCS
rplA; 50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000255|HAMAP-Rule:MF_01318}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCN18_14_9_16_R2_B_scaffold_900_6
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3722..4246
DNA (525bp) protein (175aa)
50S ribosomal protein L10 n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AEM7_AZOBR
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
rplJ; 50S ribosomal subunit protein L10
SCN18_14_9_16_R2_B_scaffold_900_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4300..4677
DNA (378bp) protein (126aa)
50S ribosomal protein L7 n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030FA838
50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCN18_14_9_16_R2_B_scaffold_900_8
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4865..9034
DNA (4170bp) protein (1390aa)
rpoB; RNA polymerase, beta subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
RNA polymerase, beta subunit n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EVM7_9PROT
SCN18_14_9_16_R2_B_scaffold_900_9
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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9093..13268
DNA (4176bp) protein (1392aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NS32_AZOS1
rpoC; DNA-directed RNA polymerase subunit beta'
SCN18_14_9_16_R2_B_scaffold_900_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13385..14512)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2B0U9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ29490.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_900_11
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14648..15229)
DNA (582bp) protein (194aa)
Putative uncharacterized protein n=1 Tax=Achromobacter xylosoxidans C54 RepID=E5U160_ALCXX
Acetyltransferase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCN18_14_9_16_R2_B_scaffold_900_12
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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15808..16179
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U4D6_9PROT
rpsL; 30S ribosomal subunit protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
SCN18_14_9_16_R2_B_scaffold_900_13
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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16195..16665
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9RZG7_9RHOB
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium thermophilum DSM 16684.;"
30S ribosomal protein S7
SCN18_14_9_16_R2_B_scaffold_900_14
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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16697..18802
DNA (2106bp) protein (702aa)
Elongation factor G n=1 Tax=Oceanibaculum indicum P24 RepID=K2IYJ9_9PROT
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
translation elongation factor G
SCN18_14_9_16_R2_B_scaffold_900_15
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18844..18987
DNA (144bp) protein (48aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=2 Tax=Phaeospirillum RepID=H8FNC6_PHAMO
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
Displaying 16 items

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