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SCN18_30_10_14_R3_B_scaffold_805

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_805_1
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3..236)
DNA (234bp) protein (78aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A {ECO:0000313|EMBL:AEI06511.1}; EC=5.99.1.3 {ECO:0000313|EMBL:AEI06511.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
DNA gyrase subunit A n=2 Tax=Oligotropha carboxidovorans RepID=B6JFC7_OLICO
SCN18_30_10_14_R3_B_scaffold_805_2
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

532..1155
DNA (624bp) protein (208aa)
MarC family membrane protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGL6_AFIFE
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_805_3
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1276..1767)
DNA (492bp) protein (164aa)
Single-stranded DNA-binding protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6R7_9BRAD
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
single-stranded DNA-binding protein (SSB)
SCN18_30_10_14_R3_B_scaffold_805_4
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2221..2940
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P667_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38087.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
outer membrane protein
SCN18_30_10_14_R3_B_scaffold_805_5
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3241..6219
DNA (2979bp) protein (993aa)
UvrABC system protein A n=2 Tax=Oligotropha carboxidovorans RepID=B6JFD2_OLICO
uvrA; excinuclease ABC subunit A
Excinuclease ABC system, subunit A {ECO:0000313|EMBL:AEI06507.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_805_6
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6307..6714)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NC20_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28137.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_805_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6935..7219
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGL0_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28136.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_805_8
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7257..7544
DNA (288bp) protein (96aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PFR4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS40381.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_805_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7602..8393)
DNA (792bp) protein (264aa)
5-carboxymethyl-2-hydroxymuconate isomerase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003457B42
Bradyrhizobium elkanii strain UASWS1015 Contig178, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48090.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_805_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8621..8992)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NPH7_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28133.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_805_11
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9372..10280
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NC14_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28132.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
cytochrome c oxidase subunit I
SCN18_30_10_14_R3_B_scaffold_805_12
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10419..10979
DNA (561bp) protein (187aa)
Proteinase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89BV4_BRADU
Proteinase {ECO:0000313|EMBL:AHY49482.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
pfpI; proteinase
SCN18_30_10_14_R3_B_scaffold_805_13
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11051..11599)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P678_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38097.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_805_14
unknown

Not on your lists

comp(11638..12021)
DNA (384bp) protein (128aa)

This feature has no annotations

SCN18_30_10_14_R3_B_scaffold_805_15
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12415..12567
DNA (153bp) protein (51aa)
Uncharacterized protein n=3 Tax=Bradyrhizobiaceae RepID=K8PI94_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS40375.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_805_16
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12736..14172
DNA (1437bp) protein (479aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089752}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089759};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Afipia felis ATCC 53690 RepID=K8NI50_AFIFE
gid; tRNA (uracil-5-)-methyltransferase Gid
SCN18_30_10_14_R3_B_scaffold_805_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14211..15278
DNA (1068bp) protein (356aa)
Protease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H685_9BRAD
Protease {ECO:0000313|EMBL:ERF85332.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
serine/threonine protein kinase
SCN18_30_10_14_R3_B_scaffold_805_18
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15268..16143)
DNA (876bp) protein (292aa)
Phytoene synthase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IWH9_RHOP2
phytoene synthase
Phytoene synthase {ECO:0000313|EMBL:ABD07431.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCN18_30_10_14_R3_B_scaffold_805_19
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16140..16439)
DNA (300bp) protein (100aa)
membrane protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003684D5C
Uncharacterized protein {ECO:0000313|EMBL:ERF85329.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_805_20
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16524..17525)
DNA (1002bp) protein (334aa)
Protein-export membrane protein SecF n=2 Tax=Oligotropha carboxidovorans RepID=B6JFN2_OLICO
secF; protein-export membrane protein SecF
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCN18_30_10_14_R3_B_scaffold_805_21
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17539..19137)
DNA (1599bp) protein (533aa)
Protein translocase subunit SecD n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKN8_AFIFE
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
secD; preprotein translocase subunit SecD
SCN18_30_10_14_R3_B_scaffold_805_22
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19181..19522)
DNA (342bp) protein (114aa)
Preprotein translocase (YajC) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0THR6_9BRAD
Preprotein translocase (YajC) {ECO:0000313|EMBL:CCE06004.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
yajC; protein translocase subunit yajC
SCN18_30_10_14_R3_B_scaffold_805_23
unknown

Not on your lists

19538..19684
DNA (147bp) protein (49aa)

This feature has no annotations

SCN18_30_10_14_R3_B_scaffold_805_24
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19718..20680
DNA (963bp) protein (321aa)
ATP-dependent protease subunit n=2 Tax=Oligotropha carboxidovorans RepID=B6JFN5_OLICO
ATP-dependent protease subunit
Putative ATPase, AAA+ family protein {ECO:0000313|EMBL:AEI06489.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_805_25
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20685..20921)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NC03_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28122.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_805_26
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21113..22441)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P687_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38107.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
peptidase M23B
SCN18_30_10_14_R3_B_scaffold_805_27
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22558..23178)
DNA (621bp) protein (207aa)
pcm; protein-L-isoaspartate O-methyltransferase Pcm (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000255|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; Short=PIMT {ECO:0000255|HAMAP-Rule:MF_00090};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Protein-L-isoaspartate O-methyltransferase n=2 Tax=Oligotropha carboxidovorans RepID=PIMT_OLICO
SCN18_30_10_14_R3_B_scaffold_805_28
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23378..23764
DNA (387bp) protein (129aa)
Response regulator receiver protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9H2_9BRAD
Putative transcriptional regulatory protein pdtaR {ECO:0000313|EMBL:CEG07954.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
response regulator receiver domain-containing protein
SCN18_30_10_14_R3_B_scaffold_805_29
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23787..24563)
DNA (777bp) protein (259aa)
surE; stationary phase survival protein SurE (EC:3.1.3.5 3.1.3.6)
5'-nucleotidase SurE {ECO:0000255|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000255|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000255|HAMAP-Rule:MF_00060}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
5'-nucleotidase SurE n=2 Tax=Oligotropha carboxidovorans RepID=SURE_OLICO
SCN18_30_10_14_R3_B_scaffold_805_30
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24568..26007)
DNA (1440bp) protein (480aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9H4_9BRAD
Displaying items 1-30 of 40 in total

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