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SCN18_25_8_15_R2_B_scaffold_1351

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1351_1
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11..898)
DNA (888bp) protein (296aa)
Transcriptional regulator, AraC family n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YB48_MESOW
AraC family transcriptional regulator {ECO:0000313|EMBL:KFL27066.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
AraC family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1351_2
unknown

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comp(1085..1498)
DNA (414bp) protein (138aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1351_3
unknown

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comp(1485..1763)
DNA (279bp) protein (93aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1351_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1839..2387
DNA (549bp) protein (183aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL31751.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_1351_5
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2420..3187)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QD60_RHOPT
Uncharacterized protein {ECO:0000313|EMBL:KKB82566.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1351_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3256..3939)
DNA (684bp) protein (228aa)
DNA repair protein RadC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE53_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL30868.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
DNA repair protein RadC
SCN18_25_8_15_R2_B_scaffold_1351_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3941..4561)
DNA (621bp) protein (207aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
Autoinducer (Acylhomoserine lactone) synthase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3B5_AGRVS
autoinducer (acylhomoserine lactone) synthase
SCN18_25_8_15_R2_B_scaffold_1351_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4691..5416)
DNA (726bp) protein (242aa)
Two-component transcriptional regulator LuxR family n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3B4_AGRVS
Uncharacterized protein {ECO:0000313|EMBL:KKB09425.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
two-component transcriptional regulator LuxR family
SCN18_25_8_15_R2_B_scaffold_1351_9
unknown

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comp(6836..7357)
DNA (522bp) protein (174aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1351_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7419..8870)
DNA (1452bp) protein (484aa)
carbohydrate kinase FGGY (EC:2.7.1.17)
carbohydrate kinase n=1 Tax=Rhizobium mongolense RepID=UPI0003B5151B
Uncharacterized protein {ECO:0000313|EMBL:KFL31402.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_1351_11
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8988..9920
DNA (933bp) protein (311aa)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Jannaschia sp. (strain CCS1) RepID=Q28PN9_JANSC
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL31403.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
periplasmic binding protein/LacI transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1351_12
CN-SCN_Microbacterium_18x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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9962..11482
DNA (1521bp) protein (507aa)
rbsA; ABC transporter ATP-binding protein (EC:3.6.3.17)
ABC transporter related protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3EXA8_KETVY
Uncharacterized protein {ECO:0000313|EMBL:KFL31404.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_1351_13
CN-SCN_Microbacterium_18x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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11485..12447
DNA (963bp) protein (321aa)
Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8RW85_9RHOB
Dolichyl-phosphate beta-glucosyltransferase {ECO:0000313|EMBL:KFL31405.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
inner-membrane translocator
SCN18_25_8_15_R2_B_scaffold_1351_14
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12444..13232)
DNA (789bp) protein (263aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I2W3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL31406.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1351_15
SCNPILOT_EXPT_750_BF_Bacteroidetes_42_16, SCNPILOT_EXPT_750_BF_Bacteroidetes_42_16, SCNPILOT_EXPT_750_BF_Bacteroidetes_42_16, SCNPILOT_EXPT_750_BF_Bacteroidetes_42_16, Bacteroidetes, Bacteria

Not on your lists

comp(13339..13677)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YRU4_AEQSU
Uncharacterized protein {ECO:0000313|EMBL:EZH75766.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1351_16
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13933..14490)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4R4S3_9RHIZ
Flagellar motor protein MotB {ECO:0000313|EMBL:KKB83253.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
OmpA/MotB domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1351_17
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14602..14967)
DNA (366bp) protein (122aa)
Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein n=5 Tax=Bacillus cereus RepID=R8DQE3_BACCE
Glyoxalase {ECO:0000313|EMBL:KKC39312.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1351_trna_1
unknown

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comp(15413..15485)
DNA (73bp)
transferRNA Trp
SCN18_25_8_15_R2_B_scaffold_1351_18
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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15622..16320
DNA (699bp) protein (233aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
carbonic anhydrase (EC:4.2.1.1)
Putative carbonic anhydrase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EPK2_BRASB
SCN18_25_8_15_R2_B_scaffold_1351_19
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16326..16592)
DNA (267bp) protein (89aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL31755.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_1351_20
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16850..17044
DNA (195bp) protein (65aa)
Protein translocase subunit SecE n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP8_PELHB
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
preprotein translocase subunit SecE
SCN18_25_8_15_R2_B_scaffold_1351_21
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17081..17611
DNA (531bp) protein (177aa)
Transcription termination/antitermination protein NusG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP7_PELHB
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transcription antitermination protein NusG
SCN18_25_8_15_R2_B_scaffold_1351_22
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17794..18222
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP6_PELHB
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
50S ribosomal protein L11
SCN18_25_8_15_R2_B_scaffold_1351_23
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18228..18920
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=RL1_METPB
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
rplA; 50S ribosomal protein L1
SCN18_25_8_15_R2_B_scaffold_1351_24
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19216..19734
DNA (519bp) protein (173aa)
50S ribosomal protein L10 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP4_PELHB
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
50S ribosomal protein L10
SCN18_25_8_15_R2_B_scaffold_1351_25
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19792..20166
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=RL7_OCHA4
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
rplL; 50S ribosomal protein L7/L12
SCN18_25_8_15_R2_B_scaffold_1351_26
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20600..23968
DNA (3369bp) protein (1123aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC44_PELHB
DNA-directed RNA polymerase subunit beta
Displaying 27 items

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