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SCN18_25_8_15_R2_B_scaffold_2336

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2336_1
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(60..629)
DNA (570bp) protein (190aa)
Ribosomal subunit interface protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9A8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL30380.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ribosomal subunit interface protein
SCN18_25_8_15_R2_B_scaffold_2336_2
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(917..2425)
DNA (1509bp) protein (503aa)
RNA polymerase sigma-54 factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8L4_PELHB
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
RNA polymerase sigma-54 factor RpoN
SCN18_25_8_15_R2_B_scaffold_2336_3
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2535..3284)
DNA (750bp) protein (250aa)
Lipopolysaccharide ABC transporter, ATP-binding protein LptB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8L5_PELHB
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL30382.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
lipopolysaccharide ABC transporter ATP-binding protein LptB
SCN18_25_8_15_R2_B_scaffold_2336_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3281..3739)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8L6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL30383.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2336_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3736..4371)
DNA (636bp) protein (212aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL30384.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_2336_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4382..4996)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0FXV4_9BRAD
3'-5' exonuclease {ECO:0000313|EMBL:KFL30385.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2336_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5204..6460
DNA (1257bp) protein (419aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
S-adenosylmethionine synthetase (EC:2.5.1.6)
UPI0003CDEFFE related cluster n=1 Tax=unknown RepID=UPI0003CDEFFE
SCN18_25_8_15_R2_B_scaffold_2336_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6539..7243
DNA (705bp) protein (235aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA58_PELHB
tRNA (guanine-N(7)-)-methyltransferase
SCN18_25_8_15_R2_B_scaffold_2336_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7383..7751
DNA (369bp) protein (123aa)
Putative transcriptional regulator n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQY7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB78957.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
HxlR family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_2336_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7799..8086)
DNA (288bp) protein (96aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL30388.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_2336_11
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8327..8992
DNA (666bp) protein (222aa)
flavodoxin reductase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B41AE1
Flavodoxin reductase {ECO:0000313|EMBL:KFL30389.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
oxidoreductase FAD/NAD(P)-binding domain-containing protein
SCN18_25_8_15_R2_B_scaffold_2336_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8996..10243)
DNA (1248bp) protein (416aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VJE2_RHILT
Uncharacterized protein {ECO:0000313|EMBL:KKB78754.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
diguanylate cyclase
SCN18_25_8_15_R2_B_scaffold_2336_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10469..11098
DNA (630bp) protein (210aa)
Ribosome maturation factor RimP n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA59_PELHB
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
clustered with transcription termination protein NusA
SCN18_25_8_15_R2_B_scaffold_2336_14
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11099..12712
DNA (1614bp) protein (538aa)
Transcription termination protein NusA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA60_PELHB
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transcription termination protein NusA
SCN18_25_8_15_R2_B_scaffold_2336_15
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12737..13426
DNA (690bp) protein (230aa)
Putative nucleic-acid-binding protein implicated in transcription termination / ribosomal protein L7Ae family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA61_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB78757.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
putative nucleic-acid-binding protein implicated in transcription termination / ribosomal protein L7Ae family protein
SCN18_25_8_15_R2_B_scaffold_2336_16
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13432..13521
DNA (90bp) protein (30aa)
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Displaying 16 items

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