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SCN18_14_9_16_R4_B_scaffold_1366

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_1366_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..656)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Mycobacterium phlei RIVM601174 RepID=I0S0E7_MYCPH
Uncharacterized protein {ECO:0000313|EMBL:EID16850.1}; TaxID=1150599 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium phlei RIVM601174.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1366_2
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(892..1392)
DNA (501bp) protein (167aa)
transcriptional regulator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B33911
Putative MucR family transcriptional regulator {ECO:0000313|EMBL:GAM01126.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
transcriptional regulator
SCN18_14_9_16_R4_B_scaffold_1366_3
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1804..3462)
DNA (1659bp) protein (553aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
urocanate hydratase (EC:4.2.1.49)
Urocanate hydratase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=HUTU_SPHWW
SCN18_14_9_16_R4_B_scaffold_1366_4
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3459..4253)
DNA (795bp) protein (265aa)
formimidoylglutamase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCF1C
Uncharacterized protein {ECO:0000313|EMBL:AHE54747.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
N-formylglutamate amidohydrolase
SCN18_14_9_16_R4_B_scaffold_1366_5
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4420..5946)
DNA (1527bp) protein (509aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
histidine ammonia-lyase (EC:4.3.1.3)
Histidine ammonia-lyase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VKX0_9SPHN
SCN18_14_9_16_R4_B_scaffold_1366_6
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5943..7133)
DNA (1191bp) protein (397aa)
Imidazolonepropionase {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112}; EC=3.5.2.7 {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112};; Imidazolone-5-propionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00372}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
imidazolonepropionase (EC:3.5.2.7)
imidazolonepropionase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C4EC
SCN18_14_9_16_R4_B_scaffold_1366_7
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7334..8677
DNA (1344bp) protein (448aa)
N-formimino-L-glutamate deiminase (EC:3.5.3.13)
N-formimino-L-glutamate deiminase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B63427
Uncharacterized protein {ECO:0000313|EMBL:AHE54750.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCN18_14_9_16_R4_B_scaffold_1366_8
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8674..9375
DNA (702bp) protein (234aa)
Histidine utilization repressor n=1 Tax=Sphingomonas sp. LH128 RepID=J8VNZ2_9SPHN
Histidine utilization repressor {ECO:0000313|EMBL:EJU09166.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
GntR family transcriptional regulator
SCN18_14_9_16_R4_B_scaffold_1366_9
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9372..9935)
DNA (564bp) protein (188aa)
XRE family transcriptional regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DD060A
XRE family transcriptional regulator
XRE family transcriptional regulator {ECO:0000313|EMBL:AGH51118.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCN18_14_9_16_R4_B_scaffold_1366_10
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10025..10489
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Sphingomonas RepID=UPI0002894989
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIT08304.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_14_9_16_R4_B_scaffold_1366_11
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10509..11456
DNA (948bp) protein (316aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
diaminopimelate epimerase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDB45
diaminopimelate epimerase
SCN18_14_9_16_R4_B_scaffold_1366_12
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11453..12220
DNA (768bp) protein (256aa)
Methyltransferase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NYS2_AZOS1
methyltransferase
Methyltransferase {ECO:0000313|EMBL:BAI73551.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCN18_14_9_16_R4_B_scaffold_1366_13
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12227..12709)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003685F49
DNA, contig: SP636 {ECO:0000313|EMBL:GAN14312.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1366_14
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12751..12831
DNA (81bp) protein (27aa)
Displaying 14 items

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