ggKbase home page

SCN18_26_2_15_R5_B_Alphaproteobacteria_66_27

In projects: SCN18_26_2_15_R5_B  |  scn18_genomes  |  SCN_ET-SeqDB_Dereplicated  |  SCN_92

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

SCN18_26_2_15_R5_B_metabat2_012

Displaying items 101-150 of 445 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCN18_26_2_15_R5_B_scaffold_2623
Order: Rhizobiales (80%)
5 5684 bp 64.74 23.88 94.95
SCN18_26_2_15_R5_B_scaffold_11038
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial (50%)
2 1646 bp 69.81 23.88 100.06
SCN18_26_2_15_R5_B_scaffold_6652
Class: Alphaproteobacteria (100%)
3 2606 bp 64.39 23.89 83.69
SCN18_26_2_15_R5_B_scaffold_2249
Order: Rhizobiales (57.14%)
7 6525 bp 65.10 23.93 86.30
SCN18_26_2_15_R5_B_scaffold_1182
Class: Alphaproteobacteria (70%)
10 11718 bp 68.72 23.94 93.91
SCN18_26_2_15_R5_B_scaffold_4171
Species: SCNPILOT_SOLID2_TRIM150_Afipia_61_20 (50%)
4 3842 bp 66.50 23.97 94.95
SCN18_26_2_15_R5_B_scaffold_1314
Class: Alphaproteobacteria (54.55%)
11 10480 bp 66.22 24.06 86.68
SCN18_26_2_15_R5_B_scaffold_1641
Species: SCNPILOT_CONT_750_BF_Rhodospirillales_70_18 (71.43%)
7 8501 bp 67.82 24.12 94.47
SCN18_26_2_15_R5_B_scaffold_4684
Species: SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 (50%)
4 3512 bp 67.23 24.13 94.82
SCN18_26_2_15_R5_B_scaffold_6505
Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)
2 2664 bp 66.67 24.16 90.88
SCN18_26_2_15_R5_B_scaffold_6628
Genus: Afipia (50%)
4 2616 bp 64.30 24.20 92.09
SCN18_26_2_15_R5_B_scaffold_2039
Phylum: Proteobacteria (66.67%)
6 7135 bp 64.85 24.22 85.86
SCN18_26_2_15_R5_B_scaffold_2246
Species: SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 (75%)
4 6531 bp 68.66 24.23 94.17
SCN18_26_2_15_R5_B_scaffold_472
Class: Alphaproteobacteria (59.26%)
27 30976 bp 66.65 24.32 91.39
SCN18_26_2_15_R5_B_scaffold_4844
Order: Rhizobiales (60%)
5 3421 bp 62.88 24.33 86.64
SCN18_26_2_15_R5_B_scaffold_8970
Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (66.67%)
3 1981 bp 62.34 24.38 82.84
SCN18_26_2_15_R5_B_scaffold_1441
Class: Alphaproteobacteria (60%)
10 9577 bp 66.47 24.39 82.29
SCN18_26_2_15_R5_B_scaffold_2311
Order: Rhizobiales (60%)
5 6375 bp 69.19 24.40 99.15
SCN18_26_2_15_R5_B_scaffold_5427
Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (66.67%)
3 3137 bp 66.27 24.43 99.94
SCN18_26_2_15_R5_B_scaffold_780
Phylum: Proteobacteria (78.95%)
19 18139 bp 66.29 24.46 91.41
SCN18_26_2_15_R5_B_scaffold_1290
Class: Alphaproteobacteria (72.73%)
11 10731 bp 62.01 24.48 69.50
SCN18_26_2_15_R5_B_scaffold_2438
Class: Alphaproteobacteria (50%)
8 6063 bp 66.58 24.52 96.54
SCN18_26_2_15_R5_B_scaffold_2564
Class: Alphaproteobacteria (57.14%)
7 5779 bp 65.13 24.55 89.70
SCN18_26_2_15_R5_B_scaffold_411
Class: Alphaproteobacteria (54.29%)
35 35422 bp 65.45 24.57 94.02
SCN18_26_2_15_R5_B_scaffold_1319
Class: Alphaproteobacteria (50%)
10 10409 bp 66.41 24.57 94.04
SCN18_26_2_15_R5_B_scaffold_1075
Order: Rhizobiales (50%)
12 12789 bp 66.80 24.62 94.60
SCN18_26_2_15_R5_B_scaffold_1872
Phylum: Proteobacteria (66.67%)
9 7663 bp 65.98 24.68 81.43
SCN18_26_2_15_R5_B_scaffold_1358
Phylum: Proteobacteria (60%)
10 10125 bp 65.51 24.71 88.86
SCN18_26_2_15_R5_B_scaffold_1313
Class: Alphaproteobacteria (75%)
12 10490 bp 66.25 24.72 93.35
SCN18_26_2_15_R5_B_scaffold_1635
Class: Alphaproteobacteria (75%)
8 8544 bp 68.55 24.79 98.24
SCN18_26_2_15_R5_B_scaffold_7386
Order: Rhizobiales (66.67%)
3 2364 bp 66.03 24.81 90.99
SCN18_26_2_15_R5_B_scaffold_1770
Order: Rhizobiales (50%)
8 7976 bp 66.39 24.82 94.41
SCN18_26_2_15_R5_B_scaffold_2852
Class: Alphaproteobacteria (55.56%)
9 5304 bp 66.82 24.83 93.21
SCN18_26_2_15_R5_B_scaffold_162
Class: Alphaproteobacteria (63.04%)
92 94859 bp 63.35 24.88 85.92
SCN18_26_2_15_R5_B_scaffold_1574
Class: Alphaproteobacteria (60%)
5 8850 bp 69.37 24.95 95.93
SCN18_26_2_15_R5_B_scaffold_7001
Species: GWB2_Desulfobacterales_56_26_curated (50%)
2 2504 bp 65.46 24.98 99.20
SCN18_26_2_15_R5_B_scaffold_2921
Class: Alphaproteobacteria (80%)
5 5211 bp 61.47 25.01 83.42
SCN18_26_2_15_R5_B_scaffold_7775
Species: SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 (50%)
2 2258 bp 68.29 25.04 90.21
SCN18_26_2_15_R5_B_scaffold_897
Class: Alphaproteobacteria (64.71%)
17 15415 bp 65.57 25.06 91.22
SCN18_26_2_15_R5_B_scaffold_2297
Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)
6 6406 bp 67.45 25.08 88.37
SCN18_26_2_15_R5_B_scaffold_4676
Class: Alphaproteobacteria (71.43%)
7 3518 bp 68.93 25.16 89.54
SCN18_26_2_15_R5_B_scaffold_3278
Class: Alphaproteobacteria (50%)
6 4737 bp 65.84 25.17 91.39
SCN18_26_2_15_R5_B_scaffold_2274
Class: Alphaproteobacteria (66.67%)
6 6476 bp 68.10 25.18 95.71
SCN18_26_2_15_R5_B_scaffold_2034
Phylum: Proteobacteria (50%)
8 7151 bp 66.09 25.19 98.55
SCN18_26_2_15_R5_B_scaffold_706
Phylum: Proteobacteria (64.71%)
17 20082 bp 65.89 25.21 89.18
SCN18_26_2_15_R5_B_scaffold_4486
Phylum: Proteobacteria (60%)
5 3629 bp 64.48 25.21 90.27
SCN18_26_2_15_R5_B_scaffold_7935
Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)
2 2216 bp 67.06 25.25 94.90
SCN18_26_2_15_R5_B_scaffold_532
Order: Rhizobiales (53.85%)
26 26848 bp 67.06 25.30 92.93
SCN18_26_2_15_R5_B_scaffold_1453
Phylum: Proteobacteria (77.78%)
9 9481 bp 66.08 25.30 93.03
SCN18_26_2_15_R5_B_scaffold_280
Class: Alphaproteobacteria (56.36%)
55 52562 bp 64.77 25.31 92.62
Displaying items 101-150 of 445 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.