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SCN18_14_9_16_R1_B_Rhizobiales_65_9

In projects: SCN18_14_9_16_R1_B  |  scn18_genomes  |  SCN_ET-SeqDB_Dereplicated  |  SCN_92

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

Extracted from SCN18_14_9_16_R1_B_abawaca_094

Displaying items 351-400 of 1208 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCN18_14_9_16_R1_B_scaffold_6090
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (100%)
6 7242 bp 65.04 9.49 88.40
SCN18_14_9_16_R1_B_scaffold_6353
Species: SCNPILOT_CONT_500_BF_Rhizobiales_63_22 (60%)
5 4456 bp 66.81 9.49 99.71
SCN18_14_9_16_R1_B_scaffold_11660
Order: Rhizobiales (66.67%)
6 2434 bp 66.68 9.49 82.09
SCN18_14_9_16_R1_B_scaffold_4279
Order: Rhizobiales (62.5%)
8 10322 bp 67.52 9.49 91.67
SCN18_14_9_16_R1_B_scaffold_5674
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
9 6952 bp 65.98 9.49 91.96
SCN18_14_9_16_R1_B_scaffold_2203
Order: Rhizobiales (84.62%)
13 12400 bp 67.33 9.48 81.99
SCN18_14_9_16_R1_B_scaffold_3528
Order: Rhizobiales (77.78%)
9 7437 bp 65.66 9.48 93.10
SCN18_14_9_16_R1_B_scaffold_16484
Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (50%)
2 1662 bp 65.70 9.48 95.13
SCN18_14_9_16_R1_B_scaffold_6401
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
6 4429 bp 68.73 9.48 97.95
SCN18_14_9_16_R1_B_scaffold_7318
Species: SCNPILOT_CONT_500_BF_Rhizobiales_63_22 (75%)
4 3893 bp 66.81 9.48 91.32
SCN18_14_9_16_R1_B_scaffold_2918
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)
12 9675 bp 66.10 9.47 87.75
SCN18_14_9_16_R1_B_scaffold_2800
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (58.33%)
12 8968 bp 64.66 9.47 87.63
SCN18_14_9_16_R1_B_scaffold_27274
Species: Shinella sp. DD12 (50%)
2 1014 bp 68.05 9.47 93.79
SCN18_14_9_16_R1_B_scaffold_15004
Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (100%)
2 1837 bp 65.87 9.47 83.45
SCN18_14_9_16_R1_B_scaffold_7175
Species: Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 (100%)
3 3979 bp 66.05 9.46 94.40
SCN18_14_9_16_R1_B_scaffold_5224
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
8 5374 bp 64.91 9.46 88.65
SCN18_14_9_16_R1_B_scaffold_12137
Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (75%)
4 2331 bp 65.77 9.46 92.02
SCN18_14_9_16_R1_B_scaffold_8802
Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (50%)
2 3255 bp 67.86 9.45 90.51
SCN18_14_9_16_R1_B_scaffold_3609
Order: Rhizobiales (55.56%)
9 7315 bp 65.13 9.45 95.89
SCN18_14_9_16_R1_B_scaffold_6752
Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (100%)
2 4208 bp 67.73 9.45 97.24
SCN18_14_9_16_R1_B_scaffold_12299
Order: Rhizobiales (100%)
3 2289 bp 66.36 9.44 94.89
SCN18_14_9_16_R1_B_scaffold_5281
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (57.14%)
7 5321 bp 66.28 9.44 90.08
SCN18_14_9_16_R1_B_scaffold_19323
Species: SCNPILOT_CONT_500_BF_Rhizobiales_63_22 (100%)
1 1414 bp 66.76 9.44 99.93
SCN18_14_9_16_R1_B_scaffold_8660
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (75%)
4 3305 bp 67.81 9.44 95.76
SCN18_14_9_16_R1_B_scaffold_13844
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (75%)
4 2003 bp 65.15 9.44 86.12
SCN18_14_9_16_R1_B_scaffold_1592
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
11 13828 bp 65.31 9.43 91.62
SCN18_14_9_16_R1_B_scaffold_3863
Order: Rhizobiales (90.91%)
11 6945 bp 64.51 9.42 77.97
SCN18_14_9_16_R1_B_scaffold_4826
Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (100%)
2 5763 bp 67.01 9.42 94.27
SCN18_14_9_16_R1_B_scaffold_5014
Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (75%)
8 5565 bp 66.00 9.41 92.83
SCN18_14_9_16_R1_B_scaffold_11910
Order: Rhizobiales (66.67%)
3 2376 bp 68.27 9.41 90.78
SCN18_14_9_16_R1_B_scaffold_6972
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (60%)
5 4081 bp 66.43 9.41 90.42
SCN18_14_9_16_R1_B_scaffold_7134
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (80%)
5 4003 bp 64.63 9.41 94.50
SCN18_14_9_16_R1_B_scaffold_7128
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
6 4006 bp 66.53 9.40 87.54
SCN18_14_9_16_R1_B_scaffold_15579
Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (50%)
4 2733 bp 69.63 9.39 91.77
SCN18_14_9_16_R1_B_scaffold_1969
Order: Rhizobiales (96.3%)
27 23115 bp 65.78 9.39 86.79
SCN18_14_9_16_R1_B_scaffold_27437
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)
2 1008 bp 66.57 9.38 99.40
SCN18_14_9_16_R1_B_scaffold_6487
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (100%)
4 4366 bp 68.12 9.38 91.46
SCN18_14_9_16_R1_B_scaffold_4673
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
3 5907 bp 63.21 9.37 88.57
SCN18_14_9_16_R1_B_scaffold_7138
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)
4 4002 bp 65.69 9.37 86.66
SCN18_14_9_16_R1_B_scaffold_6774
Order: Rhizobiales (100%)
7 4196 bp 66.90 9.37 96.02
SCN18_14_9_16_R1_B_scaffold_14153
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)
2 1955 bp 64.81 9.36 99.90
SCN18_14_9_16_R1_B_scaffold_17207
Species: SCNPILOT_EXPT_1000_BF_Devosia_62_26 (50%)
2 1589 bp 72.69 9.35 99.69
SCN18_14_9_16_R1_B_scaffold_8193
Order: Rhizobiales (66.67%)
3 3482 bp 64.85 9.35 85.12
SCN18_14_9_16_R1_B_scaffold_13513
Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (100%)
1 2054 bp 66.99 9.35 95.52
SCN18_14_9_16_R1_B_scaffold_4502
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)
6 6901 bp 66.53 9.35 87.60
SCN18_14_9_16_R1_B_scaffold_13276
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
4 4030 bp 62.56 9.34 66.55
SCN18_14_9_16_R1_B_scaffold_2411
Order: Rhizobiales (76%)
25 19990 bp 67.17 9.33 88.95
SCN18_14_9_16_R1_B_scaffold_3773
Order: Rhizobiales (100%)
8 7061 bp 65.19 9.33 94.92
SCN18_14_9_16_R1_B_scaffold_4920
Order: Rhizobiales (50%)
10 5660 bp 64.84 9.33 81.86
SCN18_14_9_16_R1_B_scaffold_3825
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
6 6993 bp 64.45 9.33 96.22
Displaying items 351-400 of 1208 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.