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2019_SCN_bioreactor_t2_biofilm_scaffold_231817

Search features with annotation key words

Displaying items 1-30 of 556 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_1
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..160)
DNA (159bp) protein (53aa)
ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13K96_BURXL
TauA protein {ECO:0000313|EMBL:BAQ50060.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_2
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(292..1491)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2K7D6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE78724.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_3
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1593..2846
DNA (1254bp) protein (418aa)
soxB; sarcosine oxidase beta subunit (EC:1.5.3.1)
Sarcosine oxidase subunit beta n=1 Tax=Nitratireductor indicus C115 RepID=K2PMY6_9RHIZ
Sarcosine oxidase subunit beta {ECO:0000313|EMBL:EKF42442.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_4
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2878..3162
DNA (285bp) protein (95aa)
Sarcosine oxidase delta subunit n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HRD9_AZOC5
sarcosine oxidase subunit delta
Sarcosine oxidase delta subunit {ECO:0000313|EMBL:BAF87169.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_5
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3159..6125
DNA (2967bp) protein (989aa)
Sarcosine oxidase alpha subunit (EC:1.5.3.1)
Sarcosine oxidase alpha subunit {ECO:0000313|EMBL:AHJ61820.1}; EC=1.5.3.1 {ECO:0000313|EMBL:AHJ61820.1};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
Sarcosine oxidase alpha subunit n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BW24_GRABC
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_6
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6118..6585
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037F5BFC
sarcosine oxidase subunit gamma
Sarcosine oxidase gamma subunit {ECO:0000313|EMBL:ADH90285.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_7
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6617..7555)
DNA (939bp) protein (313aa)
Transporter n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPU8_GRABC
Mitochondrial import inner membrane translocase subunit {ECO:0000313|EMBL:GAN77446.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Transporter
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7632..8960)
DNA (1329bp) protein (443aa)
Microcin-processing peptidase 1 (PmbA) n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPU9_GRABC
Zn-dependent microcin-processing peptidase U62/PmbA/TldD {ECO:0000313|EMBL:GAN76582.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
microcin-processing peptidase 1 (PmbA)
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_9
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9011..10318)
DNA (1308bp) protein (436aa)
Peptidase, M16 family n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPV0_GRABC
Peptidase, M16 family protein
Peptidase, M16 family protein {ECO:0000313|EMBL:AHJ64157.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_10
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10315..11718)
DNA (1404bp) protein (468aa)
Threonine synthase {ECO:0000313|EMBL:EFH13013.1}; EC=4.2.3.1 {ECO:0000313|EMBL:EFH13013.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Threonine synthase (EC:4.2.3.1)
Threonine synthase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RI78_9PROT
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_11
Acetobacter malorum, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11808..13145)
DNA (1338bp) protein (446aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=178901 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter malorum.;"
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000371109C
glutamyl-tRNA synthetase
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_12
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13252..13617)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Gluconacetobacter europaeus RepID=UPI000237E214
Uncharacterized protein {ECO:0000313|EMBL:GAN78198.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_13
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13614..15293)
DNA (1680bp) protein (560aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037B230D
NAD(+) synthetase {ECO:0000313|EMBL:GAN78197.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
nadE; NAD(+) synthetase
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_14
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15362..15709)
DNA (348bp) protein (116aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HK65_9RHIZ
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:EHK58880.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
antibiotic biosynthesis monooxygenase
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_15
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15706..16044)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9I6_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG79446.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_16
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16122..16814
DNA (693bp) protein (231aa)
ArsR family transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI0003196935
ArsR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_17
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16933..17355
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TPT9_TISMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK54777.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_18
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17355..18773
DNA (1419bp) protein (473aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037E05C2
putative ECF subfamily RNA polymerase sigma-24 subunit
Putative RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AFK54778.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_19
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18614..19282)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Z0B5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EME67720.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_20
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19556..20359
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A4D3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EHL98158.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_21
Acetobacter tropicalis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20369..21472)
DNA (1104bp) protein (368aa)
Lipopolysaccharide core biosynthesis mannosyltransferase n=1 Tax=Acetobacter tropicalis NBRC 101654 RepID=F7VF68_9PROT
Lipopolysaccharide core biosynthesis mannosyltransferase {ECO:0000313|EMBL:GAA09013.1}; TaxID=749388 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter tropicalis NBRC 101654.;"
lipopolysaccharide core biosynthesis mannosyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_22
Acetobacter tropicalis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21469..22725)
DNA (1257bp) protein (419aa)
mannosyltransferase n=1 Tax=Acetobacter aceti RepID=UPI0002260403
Mannosyltransferase {ECO:0000313|EMBL:GAA09012.1}; TaxID=749388 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter tropicalis NBRC 101654.;"
putative glycosyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_23
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22789..23862)
DNA (1074bp) protein (358aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036CA137
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFH11794.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
ABC transporter ATP-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_24
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23859..24836)
DNA (978bp) protein (326aa)
ABC transporter, ATP-binding protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLQ5_9PROT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFH11793.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
oligopeptide transport ATP-binding protein OppD
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_25
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24833..25741)
DNA (909bp) protein (303aa)
ABC transporter, permease protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLQ4_9PROT
ABC transporter, permease protein {ECO:0000313|EMBL:EFH11792.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
binding-protein-dependent transport system inner membrane protein
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_26
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25860..26834)
DNA (975bp) protein (325aa)
ABC transporter permease n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E20B13
ABC transporter, permease protein {ECO:0000313|EMBL:EFH11791.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Putative transmembrane ABC transporter
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_27
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27031..28641)
DNA (1611bp) protein (537aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036E2457
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EFH11790.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_28
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28809..29966)
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EBB601
DEAD/DEAH box helicase {ECO:0000313|EMBL:EKE75795.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
DEAD/DEAH box helicase
2019_SCN_bioreactor_t2_biofilm_scaffold_231817_29
unknown

Not on your lists

30311..30544
DNA (234bp) protein (78aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_231817_30
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30613..31782
DNA (1170bp) protein (390aa)
mandelate racemase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036371A3
Uncharacterized protein {ECO:0000313|EMBL:EJZ30215.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein
Displaying items 1-30 of 556 in total

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