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2019_SCN_bioreactor_t3_biofilm_scaffold_308253

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_308253_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..310)
DNA (309bp) protein (103aa)
GTP cyclohydrolase II (EC:3.5.4.25)
GTP cyclohydrolase II n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3E7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54847.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_308253_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(307..1098)
DNA (792bp) protein (264aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:GAO54848.1}; EC=3.1.11.2 {ECO:0000313|EMBL:GAO54848.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Exodeoxyribonuclease III n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EDR2_9SPHN
exodeoxyribonuclease III
2019_SCN_bioreactor_t3_biofilm_scaffold_308253_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1469..2107)
DNA (639bp) protein (213aa)
Outer membrane lipoprotein carrier protein LolA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3E9_NOVAD
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
outer membrane lipoprotein carrier protein LolA
2019_SCN_bioreactor_t3_biofilm_scaffold_308253_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2230..2397)
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCC8_9SPHN
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
50S ribosomal protein L33
2019_SCN_bioreactor_t3_biofilm_scaffold_308253_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2509..3288)
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCC7_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:GAO54851.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_308253_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3406..3672)
DNA (267bp) protein (89aa)
transglycosylase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B52AAC
Transglycosylase associated protein {ECO:0000313|EMBL:GAO54852.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transglycosylase-associated protein
2019_SCN_bioreactor_t3_biofilm_scaffold_308253_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3808..4650)
DNA (843bp) protein (281aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=UPPP_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_308253_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4717..4890)
DNA (174bp) protein (58aa)
ABC transporter ATP-binding protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B45BEF
ABC-type multidrug transport system ATPase component {ECO:0000313|EMBL:GAO54854.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ABC transporter ATP-binding/permease
Displaying 8 items

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