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2019_SCN_bioreactor_t3_biofilm_scaffold_299623

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..395
DNA (393bp) protein (131aa)
Na+/proline symporter n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q484_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53502.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sodium:solute symporter
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

421..1311
DNA (891bp) protein (297aa)
N-acetylmuramic acid-6-phosphate etherase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I1L7_9SPHN
N-acetylmuramic acid 6-phosphate etherase {ECO:0000313|EMBL:GAO53501.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
N-acetylmuramic acid-6-phosphate etherase
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1319..2047
DNA (729bp) protein (243aa)
GntR family transcriptional regulator n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HS32_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53500.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
GntR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2258..3436
DNA (1179bp) protein (393aa)
Aspartate aminotransferase {ECO:0000313|EMBL:GAO53499.1}; EC=2.6.1.1 {ECO:0000313|EMBL:GAO53499.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Aromatic-amino-acid transaminase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ76_9SPHN
aromatic-amino-acid transaminase
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3433..4410
DNA (978bp) protein (326aa)
2-dehydropantoate 2-reductase {ECO:0000313|EMBL:GAO53498.1}; EC=1.1.1.169 {ECO:0000313|EMBL:GAO53498.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI0003809815
2-dehydropantoate 2-reductase
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4407..5144
DNA (738bp) protein (246aa)
membrane protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002DF0873
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases {ECO:0000313|EMBL:GAO53497.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
class II aldolase/adducin family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5191..6513)
DNA (1323bp) protein (441aa)
Amidohydrolase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4R4_SPHWW
Xaa-Pro dipeptidase family enzyme {ECO:0000313|EMBL:GAO53476.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amidohydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6582..8870)
DNA (2289bp) protein (763aa)
ligand-gated channel protein n=1 Tax=Sphingomonas wittichii RepID=UPI000306DAA7
Uncharacterized protein {ECO:0000313|EMBL:GAO53475.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9450..12209
DNA (2760bp) protein (920aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI000367B915
Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domain {ECO:0000313|EMBL:GAO53474.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12214..13356
DNA (1143bp) protein (381aa)
Microsomal dipeptidase {ECO:0000313|EMBL:GAO53473.1}; EC=3.4.13.19 {ECO:0000313|EMBL:GAO53473.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase M19 n=1 Tax=Sphingomonas wittichii RepID=UPI0002FC39E4
peptidase M19, renal dipeptidase
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13423..13899
DNA (477bp) protein (159aa)
Transcriptional regulator, AsnC family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V9U1_SPHWW
Transcriptional regulator of asnC family {ECO:0000313|EMBL:GAO53472.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AsnC family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14223..15521
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WI16_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53471.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15525..16892)
DNA (1368bp) protein (456aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD10A4
Uncharacterized protein {ECO:0000313|EMBL:GAO53470.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16968..18542)
DNA (1575bp) protein (525aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:GAO53469.1}; EC=6.2.1.3 {ECO:0000313|EMBL:GAO53469.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
PREDICTED: 4-coumarate--CoA ligase-like 2-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C198BB
acyl-CoA synthetase
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18539..19366)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003724558
Uncharacterized protein {ECO:0000313|EMBL:GAO53468.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19363..21324)
DNA (1962bp) protein (654aa)
Glucose dehydrogenase, PQQ-dependent {ECO:0000313|EMBL:GAO53467.1}; EC=1.1.5.2 {ECO:0000313|EMBL:GAO53467.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
quinoprotein glucose dehydrogenase (EC:1.1.5.2)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00036EFD52
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21333..23510)
DNA (2178bp) protein (726aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000367AB9E
Uncharacterized protein {ECO:0000313|EMBL:GAO53466.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative TonB dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23690..24292
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z6G4_9ACTN
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO53465.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transcriptional regulator, TetR family
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24382..24783
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4PEK4_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:GAO53464.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_299623_20
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24796..24948)
DNA (153bp) protein (51aa)
Transposase IS4 n=3 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IEE8_9SPHN
Transposase IS4 {ECO:0000313|EMBL:EQB10065.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
transposase, IS4 family protein
Displaying 20 items

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