ggKbase | organisms

Consensus taxonomy: Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Metagenomic Context

Parent: 2019_SCN_bioreactor_t3_planktonic_UNK

Properties

Avg. coverage: 6.13 Longest contig: 30.70 Kbp Bin length: 5.23 Mbp GC content: 54.48 %

Contigs count: 1189 Features count: 4827 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 46 / 55 BSCG 44 / 51 MC: 2 ASCG 12 / 38 MC: 3

Displaying items 751-800 of 1189 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
2019_SCN_bioreactor_t3_planktonic_scaffold_37055 Species: Planctopirus limnophila (50%)	2	1242 bp	56.28	7.13	84.54
2019_SCN_bioreactor_t3_planktonic_scaffold_9031 Species: RBG_16_Planctomycetes_64_10_curated (100%)	2	2441 bp	51.86	6.51	88.24
2019_SCN_bioreactor_t3_planktonic_scaffold_19357 Species: Gimesia maris (50%)	2	3835 bp	56.22	6.96	89.41
2019_SCN_bioreactor_t3_planktonic_scaffold_72023 Species: Blastopirellula marina (50%)	2	1093 bp	56.36	5.35	88.38
2019_SCN_bioreactor_t3_planktonic_scaffold_66541 Species: Planctopirus limnophila (50%)	2	1159 bp	52.63	5.18	98.88
2019_SCN_bioreactor_t3_planktonic_scaffold_971 Species: RBG_13_Planctomycetes_62_9_curated (50%)	2	1730 bp	52.77	5.72	77.69
2019_SCN_bioreactor_t3_planktonic_scaffold_10447 Species: Gimesia maris (50%)	2	1520 bp	53.49	4.44	81.51
2019_SCN_bioreactor_t3_planktonic_scaffold_34601 Species: Singulisphaera acidiphila (50%)	2	1140 bp	51.93	5.79	69.47
2019_SCN_bioreactor_t3_planktonic_scaffold_50018 Species: Planctopirus limnophila (50%)	2	1236 bp	55.83	4.85	78.40
2019_SCN_bioreactor_t3_planktonic_scaffold_120108 Species: Gimesia maris (50%)	2	1132 bp	53.71	7.69	78.45
2019_SCN_bioreactor_t3_planktonic_scaffold_20572 Species: Planctopirus limnophila (50%)	2	1445 bp	53.36	5.50	67.68
2019_SCN_bioreactor_t3_planktonic_scaffold_68161 Species: Planctopirus limnophila (50%)	2	1150 bp	56.70	6.26	99.13
2019_SCN_bioreactor_t3_planktonic_scaffold_78103 Species: Planctopirus limnophila (50%)	2	1404 bp	55.63	7.48	76.07
2019_SCN_bioreactor_t3_planktonic_scaffold_26434 Species: Planctopirus limnophila (50%)	2	1324 bp	55.82	5.44	82.25
2019_SCN_bioreactor_t3_planktonic_scaffold_34618 Species: Singulisphaera acidiphila (50%)	2	1776 bp	53.55	5.15	96.79
2019_SCN_bioreactor_t3_planktonic_scaffold_35843 Species: Blastopirellula marina (100%)	2	1239 bp	55.77	5.69	92.01
2019_SCN_bioreactor_t3_planktonic_scaffold_45383 Species: Gimesia maris (50%)	2	2974 bp	54.10	6.51	82.41
2019_SCN_bioreactor_t3_planktonic_scaffold_4581 Species: Pirellula staleyi (100%)	2	2271 bp	52.44	5.48	86.39
2019_SCN_bioreactor_t3_planktonic_scaffold_37124 Species: Gimesia maris (50%)	2	1469 bp	53.17	7.05	73.72
2019_SCN_bioreactor_t3_planktonic_scaffold_10476 Species: Planctopirus limnophila (50%)	2	1905 bp	54.17	5.28	84.41
2019_SCN_bioreactor_t3_planktonic_scaffold_139741 Species: Planctopirus limnophila (100%)	2	1830 bp	56.39	6.31	91.48
2019_SCN_bioreactor_t3_planktonic_scaffold_68173 Species: Singulisphaera acidiphila (100%)	2	1388 bp	56.41	6.16	98.99
2019_SCN_bioreactor_t3_planktonic_scaffold_59822 Species: Planctopirus limnophila (100%)	2	1052 bp	56.94	6.13	103.23
2019_SCN_bioreactor_t3_planktonic_scaffold_110997 Species: Planctopirus limnophila (50%)	2	1848 bp	57.14	5.76	82.14
2019_SCN_bioreactor_t3_planktonic_scaffold_87550 Species: Rhodopirellula baltica (50%)	2	1263 bp	52.89	5.11	91.92
2019_SCN_bioreactor_t3_planktonic_scaffold_104158 Species: Gimesia maris (50%)	2	1748 bp	53.43	6.61	97.48
2019_SCN_bioreactor_t3_planktonic_scaffold_109575 Species: Gimesia maris (100%)	2	2304 bp	52.69	7.10	94.92
2019_SCN_bioreactor_t3_planktonic_scaffold_111012 Species: RBG_16_Planctomycetes_64_12_curated (50%)	2	2533 bp	53.22	5.63	90.25
2019_SCN_bioreactor_t3_planktonic_scaffold_112349 Species: Planctopirus limnophila (50%)	2	1066 bp	54.13	6.33	49.53
2019_SCN_bioreactor_t3_planktonic_scaffold_14965 Species: Planctopirus limnophila (100%)	2	2680 bp	52.09	5.43	64.48
2019_SCN_bioreactor_t3_planktonic_scaffold_59862 Species: Planctopirus limnophila (100%)	2	1284 bp	54.44	5.14	90.65
2019_SCN_bioreactor_t3_planktonic_scaffold_44154 Species: Pirellula staleyi (50%)	2	3361 bp	55.49	6.52	87.74
2019_SCN_bioreactor_t3_planktonic_scaffold_83103 Species: Singulisphaera acidiphila (50%)	2	2390 bp	54.90	5.15	81.09
2019_SCN_bioreactor_t3_planktonic_scaffold_78134 Species: Singulisphaera acidiphila (50%)	2	3372 bp	55.60	6.01	65.93
2019_SCN_bioreactor_t3_planktonic_scaffold_136681 Species: RBG_13_Planctomycetes_63_9_curated (50%)	2	1542 bp	51.17	7.20	82.49
2019_SCN_bioreactor_t3_planktonic_scaffold_3477 Species: Singulisphaera acidiphila (50%)	2	4691 bp	54.23	6.36	90.11
2019_SCN_bioreactor_t3_planktonic_scaffold_44160 Species: Gimesia maris (50%)	2	2656 bp	52.97	8.25	63.93
2019_SCN_bioreactor_t3_planktonic_scaffold_102402 Species: Pirellula staleyi (100%)	2	1540 bp	56.62	5.45	81.23
2019_SCN_bioreactor_t3_planktonic_scaffold_82040 Species: Planctopirus limnophila (50%)	2	2592 bp	51.77	5.79	61.57
2019_SCN_bioreactor_t3_planktonic_scaffold_31598 Species: Gimesia maris (50%)	2	1678 bp	56.44	4.92	96.72
2019_SCN_bioreactor_t3_planktonic_scaffold_132065 Species: RBG_16_Planctomycetes_64_12_curated (50%)	2	2392 bp	53.93	5.14	79.77
2019_SCN_bioreactor_t3_planktonic_scaffold_1055 Species: Planctopirus limnophila (100%)	2	1295 bp	54.36	3.59	89.88
2019_SCN_bioreactor_t3_planktonic_scaffold_136696 Species: Gimesia maris (50%)	2	1033 bp	53.92	4.94	52.27
2019_SCN_bioreactor_t3_planktonic_scaffold_78159 Species: Rhodopirellula baltica (50%)	2	1513 bp	55.12	5.25	87.64
2019_SCN_bioreactor_t3_planktonic_scaffold_98521 Species: Gimesia maris (50%)	2	1456 bp	56.25	5.05	92.93
2019_SCN_bioreactor_t3_planktonic_scaffold_80691 Species: Planctopirus limnophila (50%)	2	2105 bp	52.02	7.77	95.34
2019_SCN_bioreactor_t3_planktonic_scaffold_19456 Species: Rhodopirellula sallentina (50%)	2	1544 bp	52.33	5.25	81.41
2019_SCN_bioreactor_t3_planktonic_scaffold_90332 Species: Planctopirus limnophila (50%)	2	1821 bp	52.99	5.11	71.83
2019_SCN_bioreactor_t3_planktonic_scaffold_68260 Species: Gimesia maris (100%)	2	1592 bp	55.28	5.18	95.54
2019_SCN_bioreactor_t3_planktonic_scaffold_17258 Species: Singulisphaera acidiphila (50%)	2	2257 bp	55.16	6.78	99.16

Displaying items 751-800 of 1189 in total

2019_SCN_bioreactor_t3_planktonic_Planctomycetes_54_6

2019_SCN_bioreactor_t3_planktonic_Planctomycetales_54_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

2019_SCN_bioreactor_t3_planktonic_Planctomycetes_54_6

2019_SCN_bioreactor_t3_planktonic_Planctomycetales_54_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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