ggKbase home page

cn_combo_scaffold_977

Alias: BURK59_13

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_977_1
Zea mays, Zea, Poales, commelinids, Streptophyta, Viridiplantae

Not on your lists

comp(2..574)
DNA (573bp) protein (191aa)
Putative uncharacterized protein n=1 Tax=Zea mays RepID=B6U1N0_MAIZE
Putative uncharacterized protein {ECO:0000313|EMBL:ACG43263.1}; TaxID=4577 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
peptidase C14, caspase catalytic subunit p20
cn_combo_scaffold_977_2
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(862..1719)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI00036E06BC
ATPase involved in chromosome partitioning {ECO:0000313|EMBL:EUJ10280.1}; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophila
non-specific protein-tyrosine kinase
cn_combo_scaffold_977_3
Pseudomonas sp. VLB120, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1732..3378)
DNA (1647bp) protein (549aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Pseudomonas sp. VLB120 RepID=U5VEB8_9PSED
lipopolysaccharide biosynthesis protein
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:AGZ35197.1}; TaxID=69328 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pse
cn_combo_scaffold_977_4
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3419..4591)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida (strain F1 / ATCC 700007) RepID=A5W3L4_PSEP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ78724.1}; Flags: Precursor;; TaxID=351746 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source=
cn_combo_scaffold_977_5
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4588..5169)
DNA (582bp) protein (194aa)
Polysaccharide export protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E2D0_PSEDT
Polysaccharide export protein {ECO:0000313|EMBL:EGB99430.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas
putative polysaccharide export protein
cn_combo_scaffold_977_6
Methylotenera mobilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5268..5936)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WXQ8_METML
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT48707.1}; Flags: Precursor;; TaxID=583345 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source
cn_combo_scaffold_977_7
unknown

Not on your lists

comp(6011..6691)
DNA (681bp) protein (227aa)

This feature has no annotations

cn_combo_scaffold_977_8
unknown

Not on your lists

comp(6713..7321)
DNA (609bp) protein (203aa)

This feature has no annotations

cn_combo_scaffold_977_9
Pseudomonas sp. VLB120, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7399..8817)
DNA (1419bp) protein (473aa)
Sugar transferase n=1 Tax=Pseudomonas sp. VLB120 RepID=U5VHT0_9PSED
sugar transferase
Sugar transferase {ECO:0000313|EMBL:AGZ35211.1}; TaxID=69328 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. VLB120.;"
cn_combo_scaffold_977_10
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8814..9659)
DNA (846bp) protein (282aa)
Putative signal transduction protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47IF2_DECAR
signal transduction protein
Tax=BJP_IG2103_Dechloromonas_63_51
cn_combo_scaffold_977_11
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9815..10318
DNA (504bp) protein (168aa)
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DLU7_METS0
putative Crp/Fnr family transcriptional regulator
Putative transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ADI30641.1}; Flags: Precursor;; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilace
cn_combo_scaffold_977_12
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10352..10894)
DNA (543bp) protein (181aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_014
methionine sulfoxide reductase A n=1 Tax=Acidovorax avenae RepID=UPI0002D4FF63
peptide methionine sulfoxide reductase
cn_combo_scaffold_977_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11007..11714
DNA (708bp) protein (236aa)
protein-l-isoaspartate(d-aspartate) o-methyltransferase (EC:2.1.1.77)
protein-L-isoaspartate O-methyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037E90B2
Protein-L-isoaspartate carboxylmethyltransferase {ECO:0000313|EMBL:GAD22527.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" sour
cn_combo_scaffold_977_14
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11730..12068
DNA (339bp) protein (113aa)
Rhodanese domain protein n=2 Tax=Acidovorax RepID=A1W7H8_ACISJ
rhodanese domain-containing protein
Rhodanese domain protein {ECO:0000313|EMBL:ABM42203.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strai
cn_combo_scaffold_977_trna_2
unknown

Not on your lists

comp(12333..12422)
DNA (90bp)
transferRNA
cn_combo_scaffold_977_15
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12468..13691)
DNA (1224bp) protein (408aa)
aspartate kinase (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovo
Aspartokinase n=2 Tax=Acidovorax RepID=A1W6E5_ACISJ
cn_combo_scaffold_977_16
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13794..14753)
DNA (960bp) protein (320aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00054821};; tRNA(Ile)-2-lysyl-cytidine
tRNA(Ile)-lysidine synthase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T3D6_ACIDE
tRNA(Ile)-lysidine synthetase
cn_combo_scaffold_977_17
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14777..15754)
DNA (978bp) protein (326aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4X7_RAMTT
accA; acetyl-CoA carboxylase subunit alpha
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=
cn_combo_scaffold_977_18
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15809..16444)
DNA (636bp) protein (212aa)
HhH-GPD family protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T3D8_ACIDE
HhH-GPD family protein {ECO:0000313|EMBL:EER60989.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii
HhH-GPD family protein
cn_combo_scaffold_977_19
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16490..17995)
DNA (1506bp) protein (502aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WCG8_DELAC
cn_combo_scaffold_977_20
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18009..19007
DNA (999bp) protein (333aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BT76_9BURK
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
hypothetical protein
cn_combo_scaffold_977_21
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19086..19667
DNA (582bp) protein (194aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
peptidyl-prolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q410_ACIAP
cn_combo_scaffold_977_22
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19679..20206
DNA (528bp) protein (176aa)
peptidyl-prolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Peptidyl-prolyl cis-trans isomerase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZX1_ALIDB
cn_combo_scaffold_977_23
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20218..20991
DNA (774bp) protein (258aa)
UDP-2,3-diacylglucosamine hydrolase {ECO:0000256|HAMAP-Rule:MF_00575}; EC=3.6.1.54 {ECO:0000256|HAMAP-Rule:MF_00575};; UDP-2,3-diacylglucosamine diphosphatase {ECO:0000256|HAMAP-Rule:MF_00575}; TaxID=
UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003779415
UDP-2,3-diacylglucosamine hydrolase
cn_combo_scaffold_977_24
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20992..21813
DNA (822bp) protein (274aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZW9_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84672.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
cn_combo_scaffold_977_25
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21820..22713)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WNP6_DELAC
Uncharacterized protein {ECO:0000313|EMBL:KFJ09978.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseud
hypothetical protein
cn_combo_scaffold_977_26
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22794..24158)
DNA (1365bp) protein (455aa)
beta-Casp domain-containing protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000379254C
Predicted exonuclease of the beta-lactamase fold involved in RNA processing {ECO:0000313|EMBL:GAD24318.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamon
RNA-metabolising metallo-beta-lactamase
cn_combo_scaffold_977_27
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24293..24997)
DNA (705bp) protein (235aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBas
Uracil-DNA glycosylase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TUI3_ALIDB
uracil-DNA glycosylase
cn_combo_scaffold_977_28
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25246..26631)
DNA (1386bp) protein (462aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Coma
Coproporphyrinogen-III oxidase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C1H9_9BURK
coproporphyrinogen III oxidase
cn_combo_scaffold_977_29
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26738..27454
DNA (717bp) protein (239aa)
cAMP-binding protein n=1 Tax=Acidovorax sp. CF316 RepID=J1ECC7_9BURK
cAMP-binding protein {ECO:0000313|EMBL:EJE50046.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
Crp/FNR family transcriptional regulator
Displaying items 1-30 of 72 in total

View Taxonomy