ggKbase home page

cn_combo_scaffold_338_32

Organism: CN-SCN_Comamonas_56x

near complete RP 48 / 55 MC: 1 BSCG 48 / 51 ASCG 14 / 38 MC: 1
Location: comp(30825..32933)

Top 3 Functional Annotations

Value Algorithm Source
Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XU63_ALCXX similarity UNIREF
DB: UNIREF100
  • Identity: 80.7
  • Coverage: 694.0
  • Bit_score: 1108
  • Evalue 0.0
Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV similarity KEGG
DB: KEGG
  • Identity: 80.7
  • Coverage: 694.0
  • Bit_score: 1108
  • Evalue 0.0
  • rbh
Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) {ECO:0000313|EMBL:CCH05448.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenac similarity UNIPROT
DB: UniProtKB
  • Identity: 80.7
  • Coverage: 694.0
  • Bit_score: 1108
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Achromobacter xylosoxidans → Achromobacter → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2109
ATGCCCCAGACCGCCTTCGCCCCCCGCCTGCAGCGCATCGTGCAAGTGGCCACCAGCCGCAACGATCTGGTGCTGGCCTTTTTCCTGGTGGCGGTCATCTTCATGATGATCCTGCCGCTGCCCACCTGGCTGGTGGACACGCTGATCGGCATCAACATGACGGTCTCGGCCATCTTGCTGATGGTGGCCATGTACCTGCCCTCGCCGCTGTCGTTCTCGTCGTTTCCGTCGGTGCTCCTGATCACCACCCTGTTTCGCCTGGGCATCTCGATCGCCACCACGCGCCTGATCCTGTTGCAGGGCGACGCCGGGCACATCATCTTCACCTTCGGCAACTTCGTGGTGGGCGGCAACCTGATCGTCGGCCTGGTGGTGTTCCTGATTTTGACCATCGTGCAGTTCGTGGTCATCACCAAGGGGGCCGAGCGCGTGGCCGAGGTCGCGGCGCGCTTTTCGCTGGACGCCATGCCGGGCAAGCAAATGTCCATCGACGGCGACATGCGCGCCGGCACCATAGACATGGACGAGGCCAAGCGCCGCCGCGGCATCGTCGAGAAAGAAAGCCAGCTCTACGGCGCGATGGACGGGGCGATGAAATTCGTCAAGGGCGACGCCATCGCCGGCCTCATCATCGTCGCCGTCAATCTGCTGGGCGGCCTGTTGATCGGCGTGATGCAGCGCGGCATGAGCGCGGGCGACGCGATGAAGACCTATTCGGTGCTGACCATAGGCGATGGCCTGATCGCGCAGATCCCGGCGCTGTTCATCGCGATTTGCGCCGGCATGATCGTCACCCGCGTGCAGTCGGGCGACGGGCCGTCCAACGTCGGCAAGGACATCGGCCAGCAGGTGCTGGCGCAACCGCGCGCGCTGCTGATTGCCGCCGCCGTGGCGCTGGGCATGGGCATCATCCCGGGCATGCCGCTGCCGGTGTTCCTGACGCTGGCCGTCGTCGTCGGCACCGTGGGCTTCGTGGTGCTGCGCGGCACGCGCCGCGTGGTAGATGCCAAAACCGGCCAGGTCACCGAGGTGCCCGCGATGCAACCCGCCGGTGAAAAACCCAGGAAGAAAGCCGACGACGCCAGCGACGAATTTGCCCCCACCGTGCCCTTGCTGATGGACGTGGCCTCCGGCTTGCAGCAGGCGCTGGATGCCGACGTGCTCAACGACGAGCTGCTGAAGATCCGGCGCGCGCTGTACTACGACCTGGGCGTGCCCTTCCCCGGCATCCAGTTGCGCTTCAACGATGCGCTGCCCGAGGAGAGCTACAACATCCTGCTGTCCGAGGTGCCGGTGTCCCAGGGTCGGCTGCGCCCGGGCTGGCTGCTGGTGCGCGAGAGCGAGGCCAATTTGCAGGCGCTGCAAATCAGCTACGAGAGCGACCGCAAGTTTCTGCCGCACATCCCCACGCTCTGGGTCGCGGCCACGCTGCGCGACACGCTCACGCGCGCCGGCATCCCCTTCATGGACACCAGCCAGGTGCTGACCTACCACCTGGCCTTCGTGCTCAAGAAATACTCCGCCGATTTCATCGGCATCCAGGAAACCAAATTCCTGCTCGGCGCGATGGAAGGGCGCTTCCCCGATCTGGTCAAGGAATCCACCCGGGTGCTGCCGATCCAGAAAATCGCCGAAATCCTGCAGCGCCTGGTTTCTGAAGATATTTCGGTGCGCAATTTGCGTGCCATTCTCGAATCGCTCATCGAATGGGGGCAAAAGGAAAAGGATTCGGTGCTGCTGACCGAATACGTGCGCTCCACCCTCAAACGCCACATCAGCCACAAGTACTCCAGTCGGCAGAACGTGCTGCCGGCCTATCTGCTGGCGCCCGCCATCGAAGACACGGTGCGCGGCGCGATACGCCAGACCTCGGCCGGAAGCTACCTGGCGCTGGAGCCCGCCACCAGCAAGCGCCTGGTGGAAAACATTCGCAAAGCCGTGGGCGACCTGTCGGCCAGCACGCAGCGCCCGGTGCTGCTGACCTCCATGGATATCCGCCGCTACATGCGCAAGATGATCGAACAAGACTTGTACGACCTGCCGGTGCTGAGTTACCAGGAGTTGACGCAAGAGGTGAATATCCAGCCGCTGGCCAGAATCGACCTGTAA
PROTEIN sequence
Length: 703
MPQTAFAPRLQRIVQVATSRNDLVLAFFLVAVIFMMILPLPTWLVDTLIGINMTVSAILLMVAMYLPSPLSFSSFPSVLLITTLFRLGISIATTRLILLQGDAGHIIFTFGNFVVGGNLIVGLVVFLILTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDGDMRAGTIDMDEAKRRRGIVEKESQLYGAMDGAMKFVKGDAIAGLIIVAVNLLGGLLIGVMQRGMSAGDAMKTYSVLTIGDGLIAQIPALFIAICAGMIVTRVQSGDGPSNVGKDIGQQVLAQPRALLIAAAVALGMGIIPGMPLPVFLTLAVVVGTVGFVVLRGTRRVVDAKTGQVTEVPAMQPAGEKPRKKADDASDEFAPTVPLLMDVASGLQQALDADVLNDELLKIRRALYYDLGVPFPGIQLRFNDALPEESYNILLSEVPVSQGRLRPGWLLVRESEANLQALQISYESDRKFLPHIPTLWVAATLRDTLTRAGIPFMDTSQVLTYHLAFVLKKYSADFIGIQETKFLLGAMEGRFPDLVKESTRVLPIQKIAEILQRLVSEDISVRNLRAILESLIEWGQKEKDSVLLTEYVRSTLKRHISHKYSSRQNVLPAYLLAPAIEDTVRGAIRQTSAGSYLALEPATSKRLVENIRKAVGDLSASTQRPVLLTSMDIRRYMRKMIEQDLYDLPVLSYQELTQEVNIQPLARIDL*