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cn_combo_scaffold_387_32

Organism: CN-SCN_Cytophagaceae_12x

partial RP 39 / 55 BSCG 38 / 51 ASCG 12 / 38
Location: comp(50493..51128)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EJS2_RUNSL similarity UNIREF
DB: UNIREF100
  • Identity: 44.7
  • Coverage: 188.0
  • Bit_score: 155
  • Evalue 8.50e-35
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 44.7
  • Coverage: 188.0
  • Bit_score: 155
  • Evalue 2.40e-35
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEI47313.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithy similarity UNIPROT
DB: UniProtKB
  • Identity: 44.7
  • Coverage: 188.0
  • Bit_score: 155
  • Evalue 1.20e-34

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Taxonomy

Runella slithyformis → Runella → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 636
TTGCCCGAATCGCCGGACTTTGTAAGTTTGGACCCGAATCGTTTCCACACTATGGATTTTCCATCGTCAGATCTTCATTTATGGAACAGGTTCCGCGAAGGGGACAGCCAGGCATTTGGCAGCATTTACAGGATGCACATTGCCGAATTGCTGAGCTATGGCTACCGGATCACGTCAAACCGGCAGTTGATCAAAGACAGCATCCACGACCTGTTCCTTCATATCTGGCTGCATCGGGAGAAGCTGTCGGAAACAGATTCCATTAAATATTATTTGTTCCGTTCTTTACGGAACCGGATCGTCCGGACGTCGACGGATCCATCGCCTTACGAGCAGGGCTTCAGGATTGACGAGCTCCTGGCGGACGCTTCCCGGGAGCAGGAGCTTATAGAACAGGAAACCCGCTCCGGCCAGCTGTCGCAGCTCAAGCAAGCCATCGACAGGCTGCCGAAACGCCAGCAGGAAGCCATACAGCTGCGGTATTTTCATTCCTTCAGCCTTGAAGAGATCTCGTCTGTCATGCAGATGAACAACCAGTCTGTCCGCAATCTCCTGCACCGCGCGATCGTGCACCTCAGGAACCACTTTGAAATCGCCGGGGGCCTTATCCTCTCCCTGATTAAAATTTTCGGATAA
PROTEIN sequence
Length: 212
LPESPDFVSLDPNRFHTMDFPSSDLHLWNRFREGDSQAFGSIYRMHIAELLSYGYRITSNRQLIKDSIHDLFLHIWLHREKLSETDSIKYYLFRSLRNRIVRTSTDPSPYEQGFRIDELLADASREQELIEQETRSGQLSQLKQAIDRLPKRQQEAIQLRYFHSFSLEEISSVMQMNNQSVRNLLHRAIVHLRNHFEIAGGLILSLIKIFG*