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berkeley_reactor_200306_biofilm_scaffold_5168

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_5168_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(192..839)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037E719F
Putative outer membrane protein {ECO:0000313|EMBL:KFC74602.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
outer membrane protein Omp31
berkeley_reactor_200306_biofilm_scaffold_5168_2
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1152..1787)
DNA (636bp) protein (212aa)
Porin n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IHU3_XANP2
porin
Porin {ECO:0000313|EMBL:ABS67586.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_5168_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2001..2750
DNA (750bp) protein (250aa)
FolM Alternative dihydrofolate reductase 1 n=1 Tax=Rhodovulum sp. PH10 RepID=J5PGW2_9RHOB
FolM Alternative dihydrofolate reductase 1 {ECO:0000313|EMBL:EJW10602.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_5168_4
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2760..3188)
DNA (429bp) protein (143aa)
UPI0003CFB2C7 related cluster n=1 Tax=unknown RepID=UPI0003CFB2C7
Hemoglobin-like protein HbN {ECO:0000313|EMBL:KFB75280.1}; Flags: Precursor;; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
glbN; hemoglobin-like protein HBN
berkeley_reactor_200306_biofilm_scaffold_5168_5
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3293..5401)
DNA (2109bp) protein (703aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2L3G4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJK81916.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
peptidase C12, subunit p20
berkeley_reactor_200306_biofilm_scaffold_5168_6
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5542..7539
DNA (1998bp) protein (666aa)
UvrABC system protein C n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IQC0_METNO
excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_5168_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8913..10787)
DNA (1875bp) protein (625aa)
Outer membrane autotransporter barrel domain-containing protein n=1 Tax=Rhizobium sp. CF142 RepID=J2AZ59_9RHIZ
Outer membrane autotransporter barrel domain-containing protein {ECO:0000313|EMBL:EJJ28855.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
outer membrane autotransporter barrel domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_5168_8
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11478..12182
DNA (705bp) protein (235aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF142 RepID=J1TAR9_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJJ28856.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
GntR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_5168_9
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12278..12925
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EMG3_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ37357.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Displaying 9 items

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