name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_9338_1
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2..949)
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000310BEAB
glycosyltransferase family 28 protein
Glycosyltransferase 28 domain {ECO:0000313|EMBL:ACA20732.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
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berkeley_reactor_200306_biofilm_scaffold_9338_2
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(946..2085)
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Glycosyl transferase group 1 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UB39_METS4
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACA20731.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
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berkeley_reactor_200306_biofilm_scaffold_9338_3
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2082..3350)
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000381A5E9
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACL61962.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
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berkeley_reactor_200306_biofilm_scaffold_9338_4
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(3347..4630)
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DB062B
Putative glycosyl transferase {ECO:0000313|EMBL:EIM25553.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_9338_5
unknown
|
Not on your lists |
comp(4697..5293)
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This feature has no annotations |
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berkeley_reactor_200306_biofilm_scaffold_9338_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5299..7980
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F69FA2
ABC-type bacteriocin/lantibiotic exporter {ECO:0000313|EMBL:KFC73251.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_9338_7
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8019..8465
|
Putative transcriptional regulator protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4G1_POLGS
transcriptional regulator protein
Putative transcriptional regulator protein {ECO:0000313|EMBL:ADZ71103.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
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berkeley_reactor_200306_biofilm_scaffold_9338_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8584..10296
|
Ferredoxin {ECO:0000313|EMBL:KFC73249.1}; EC=4.6.1.1 {ECO:0000313|EMBL:KFC73249.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F9B04D
adenylate/guanylate cyclase protein
|
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berkeley_reactor_200306_biofilm_scaffold_9338_9
Leisingera methylohalidivorans, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10448..11557
|
UPI0003D6A9B7 related cluster n=1 Tax=unknown RepID=UPI0003D6A9B7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHD02836.1}; TaxID=999552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera methylohalidivorans DSM 14336.;"
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berkeley_reactor_200306_biofilm_scaffold_9338_10
Kineosphaera limosa, Kineosphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
11568..12314
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EF941B
Methyltransferase FkbM family protein {ECO:0000313|EMBL:GAB97904.1}; TaxID=1184609 species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Kineosphaera.;" source="Kineosphaera limosa NBRC 100340.;"
methyltransferase, FkbM family
|
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berkeley_reactor_200306_biofilm_scaffold_9338_11
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12304..13197)
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Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ET15_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV07382.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Aldose 1-epimerase
|
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berkeley_reactor_200306_biofilm_scaffold_9338_12
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13202..14251)
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Putative oxidoreductase, Zn-dependent and NAD(P)-binding n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EU18_9RHIZ
Putative oxidoreductase, Zn-dependent and NAD(P)-binding {ECO:0000313|EMBL:CCV07383.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
alcohol dehydrogenase
|
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berkeley_reactor_200306_biofilm_scaffold_9338_13
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14292..15029)
|
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037CC37A
Uncharacterized protein {ECO:0000313|EMBL:KKB11948.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative Transcriptional regulator, GntR family
|
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berkeley_reactor_200306_biofilm_scaffold_9338_14
unknown
|
Not on your lists |
comp(15088..15510)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_9338_15
Rhodococcus sp. AD45, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
comp(15507..17126)
|
Gluconate 2-dehydrogenase flavoprotein {ECO:0000313|EMBL:KJF19148.1}; EC=1.1.99.3 {ECO:0000313|EMBL:KJF19148.1};; TaxID=103808 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AD45.;"
GMC oxidoreductase n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B70188
GMC oxidoreductase
|
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berkeley_reactor_200306_biofilm_scaffold_9338_16
Serratia liquefaciens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17137..18126)
|
Sugar ABC transporter permease n=1 Tax=Serratia liquefaciens ATCC 27592 RepID=S5ENK7_SERLI
sugar ABC transporter permease
Sugar ABC transporter permease {ECO:0000313|EMBL:AGQ32895.1}; TaxID=1346614 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia liquefaciens ATCC 27592.;"
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berkeley_reactor_200306_biofilm_scaffold_9338_17
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18139..19677)
|
sugar ABC transporter ATP-binding protein (EC:3.6.3.17)
Putative fused sugar transporter subunits of ABC superfamily: ATP-binding components n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ETQ0_9RHIZ
Putative fused sugar transporter subunits of ABC superfamily: ATP-binding components {ECO:0000313|EMBL:CCV07380.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
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berkeley_reactor_200306_biofilm_scaffold_9338_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19769..20740)
|
sugar ABC transporter substrate-binding protein n=1 Tax=Martelella mediterranea RepID=UPI0003716AED
sugar ABC transporter substrate-binding protein
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:AHF88670.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
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berkeley_reactor_200306_biofilm_scaffold_9338_19
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21002..21805
|
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037CC37A
Uncharacterized protein {ECO:0000313|EMBL:KKB11948.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative Transcriptional regulator, GntR family
|
|
berkeley_reactor_200306_biofilm_scaffold_9338_20
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21856..22638
|
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000373F811
short chain dehydrogenase family protein
Short chain dehydrogenase family protein {ECO:0000313|EMBL:AJZ61132.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
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berkeley_reactor_200306_biofilm_scaffold_9338_21
Moniliophthora roreri, Moniliophthora, Agaricales, Agaricomycetidae, Basidiomycota, Fungi
|
Not on your lists |
22694..23884
|
L-rhamnonate dehydratase (EC:4.2.1.90)
Mandelate racemase muconate lactonizing enzyme family protein n=1 Tax=Moniliophthora roreri (strain MCA 2997) RepID=V2WQI0_MONRO
Mandelate racemase muconate lactonizing enzyme family protein {ECO:0000313|EMBL:ESK83842.1}; TaxID=1381753 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Marasmiaceae; mitosporic Marasmiaceae; Moniliophthora.;" source="Moniliophthora roreri (strain MCA 2997) (Cocoa frosty pod rot fungus); (Crinipellis roreri).;"
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berkeley_reactor_200306_biofilm_scaffold_9338_22
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23904..24653
|
3-oxoacyl-ACP reductase n=1 Tax=Kaistia granuli RepID=UPI00037E637E
Uncharacterized protein {ECO:0000313|EMBL:EJN00110.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
short-chain dehydrogenase/reductase SDR
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berkeley_reactor_200306_biofilm_scaffold_9338_23
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24668..25126
|
Acetyltransferase n=1 Tax=Caulobacter sp. AP07 RepID=J2H6D4_9CAUL
putative acetyltransferase
Putative acetyltransferase {ECO:0000313|EMBL:AHK44840.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
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berkeley_reactor_200306_biofilm_scaffold_9338_24
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25250..26275
|
tdh3; L-threonine 3-dehydrogenase Tdh (EC:1.1.1.103)
L-threonine 3-dehydrogenase Tdh {ECO:0000313|EMBL:AFL52550.1}; EC=1.1.1.103 {ECO:0000313|EMBL:AFL52550.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
L-threonine 3-dehydrogenase Tdh n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X9J4_RHIFR
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berkeley_reactor_200306_biofilm_scaffold_9338_25
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26343..27266)
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hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003611444
Uncharacterized protein {ECO:0000313|EMBL:KGM32995.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
|
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berkeley_reactor_200306_biofilm_scaffold_9338_26
Commensalibacter intestini, Commensalibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27358..28452)
|
Putative uncharacterized protein n=1 Tax=Commensalibacter intestini A911 RepID=G6F281_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EHD13535.1}; TaxID=1088868 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae.;" source="Commensalibacter intestini A911.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_9338_27
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28603..29205)
|
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ILF7_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL60156.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
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berkeley_reactor_200306_biofilm_scaffold_9338_28
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29207..30055)
|
ABC-2 type transporter n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IB91_XANP2
ABC-2 type transporter
Transport permease protein {ECO:0000256|RuleBase:RU361157}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
|
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berkeley_reactor_200306_biofilm_scaffold_9338_29
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30052..30798)
|
ABC transporter related n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IB92_XANP2
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABS65285.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
|
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berkeley_reactor_200306_biofilm_scaffold_9338_30
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30848..31822)
|
40-residue YVTN family beta-propeller repeat protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IB93_XANP2
YVTN beta-propeller repeat-containing protein
40-residue YVTN family beta-propeller repeat protein {ECO:0000313|EMBL:ABS65286.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
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