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berkeley_reactor_200306_biofilm_scaffold_9338

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Displaying items 1-30 of 234 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_9338_1
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..949)
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000310BEAB
glycosyltransferase family 28 protein
Glycosyltransferase 28 domain {ECO:0000313|EMBL:ACA20732.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_9338_2
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(946..2085)
DNA (1140bp) protein (380aa)
Glycosyl transferase group 1 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UB39_METS4
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACA20731.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_9338_3
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2082..3350)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000381A5E9
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACL61962.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_9338_4
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3347..4630)
DNA (1284bp) protein (428aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DB062B
Putative glycosyl transferase {ECO:0000313|EMBL:EIM25553.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_9338_5
unknown

Not on your lists

comp(4697..5293)
DNA (597bp) protein (199aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_9338_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5299..7980
DNA (2682bp) protein (894aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F69FA2
ABC-type bacteriocin/lantibiotic exporter {ECO:0000313|EMBL:KFC73251.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_9338_7
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8019..8465
DNA (447bp) protein (149aa)
Putative transcriptional regulator protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4G1_POLGS
transcriptional regulator protein
Putative transcriptional regulator protein {ECO:0000313|EMBL:ADZ71103.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_9338_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8584..10296
DNA (1713bp) protein (571aa)
Ferredoxin {ECO:0000313|EMBL:KFC73249.1}; EC=4.6.1.1 {ECO:0000313|EMBL:KFC73249.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F9B04D
adenylate/guanylate cyclase protein
berkeley_reactor_200306_biofilm_scaffold_9338_9
Leisingera methylohalidivorans, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10448..11557
DNA (1110bp) protein (370aa)
UPI0003D6A9B7 related cluster n=1 Tax=unknown RepID=UPI0003D6A9B7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHD02836.1}; TaxID=999552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera methylohalidivorans DSM 14336.;"
berkeley_reactor_200306_biofilm_scaffold_9338_10
Kineosphaera limosa, Kineosphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11568..12314
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EF941B
Methyltransferase FkbM family protein {ECO:0000313|EMBL:GAB97904.1}; TaxID=1184609 species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Kineosphaera.;" source="Kineosphaera limosa NBRC 100340.;"
methyltransferase, FkbM family
berkeley_reactor_200306_biofilm_scaffold_9338_11
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12304..13197)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ET15_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV07382.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Aldose 1-epimerase
berkeley_reactor_200306_biofilm_scaffold_9338_12
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13202..14251)
DNA (1050bp) protein (350aa)
Putative oxidoreductase, Zn-dependent and NAD(P)-binding n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EU18_9RHIZ
Putative oxidoreductase, Zn-dependent and NAD(P)-binding {ECO:0000313|EMBL:CCV07383.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
alcohol dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_9338_13
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14292..15029)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037CC37A
Uncharacterized protein {ECO:0000313|EMBL:KKB11948.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative Transcriptional regulator, GntR family
berkeley_reactor_200306_biofilm_scaffold_9338_14
unknown

Not on your lists

comp(15088..15510)
DNA (423bp) protein (141aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_9338_15
Rhodococcus sp. AD45, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15507..17126)
DNA (1620bp) protein (540aa)
Gluconate 2-dehydrogenase flavoprotein {ECO:0000313|EMBL:KJF19148.1}; EC=1.1.99.3 {ECO:0000313|EMBL:KJF19148.1};; TaxID=103808 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AD45.;"
GMC oxidoreductase n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B70188
GMC oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_9338_16
Serratia liquefaciens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17137..18126)
DNA (990bp) protein (330aa)
Sugar ABC transporter permease n=1 Tax=Serratia liquefaciens ATCC 27592 RepID=S5ENK7_SERLI
sugar ABC transporter permease
Sugar ABC transporter permease {ECO:0000313|EMBL:AGQ32895.1}; TaxID=1346614 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia liquefaciens ATCC 27592.;"
berkeley_reactor_200306_biofilm_scaffold_9338_17
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18139..19677)
DNA (1539bp) protein (513aa)
sugar ABC transporter ATP-binding protein (EC:3.6.3.17)
Putative fused sugar transporter subunits of ABC superfamily: ATP-binding components n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ETQ0_9RHIZ
Putative fused sugar transporter subunits of ABC superfamily: ATP-binding components {ECO:0000313|EMBL:CCV07380.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
berkeley_reactor_200306_biofilm_scaffold_9338_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19769..20740)
DNA (972bp) protein (324aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Martelella mediterranea RepID=UPI0003716AED
sugar ABC transporter substrate-binding protein
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:AHF88670.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
berkeley_reactor_200306_biofilm_scaffold_9338_19
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21002..21805
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037CC37A
Uncharacterized protein {ECO:0000313|EMBL:KKB11948.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative Transcriptional regulator, GntR family
berkeley_reactor_200306_biofilm_scaffold_9338_20
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21856..22638
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000373F811
short chain dehydrogenase family protein
Short chain dehydrogenase family protein {ECO:0000313|EMBL:AJZ61132.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
berkeley_reactor_200306_biofilm_scaffold_9338_21
Moniliophthora roreri, Moniliophthora, Agaricales, Agaricomycetidae, Basidiomycota, Fungi

Not on your lists

22694..23884
DNA (1191bp) protein (397aa)
L-rhamnonate dehydratase (EC:4.2.1.90)
Mandelate racemase muconate lactonizing enzyme family protein n=1 Tax=Moniliophthora roreri (strain MCA 2997) RepID=V2WQI0_MONRO
Mandelate racemase muconate lactonizing enzyme family protein {ECO:0000313|EMBL:ESK83842.1}; TaxID=1381753 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Marasmiaceae; mitosporic Marasmiaceae; Moniliophthora.;" source="Moniliophthora roreri (strain MCA 2997) (Cocoa frosty pod rot fungus); (Crinipellis roreri).;"
berkeley_reactor_200306_biofilm_scaffold_9338_22
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23904..24653
DNA (750bp) protein (250aa)
3-oxoacyl-ACP reductase n=1 Tax=Kaistia granuli RepID=UPI00037E637E
Uncharacterized protein {ECO:0000313|EMBL:EJN00110.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_9338_23
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24668..25126
DNA (459bp) protein (153aa)
Acetyltransferase n=1 Tax=Caulobacter sp. AP07 RepID=J2H6D4_9CAUL
putative acetyltransferase
Putative acetyltransferase {ECO:0000313|EMBL:AHK44840.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
berkeley_reactor_200306_biofilm_scaffold_9338_24
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25250..26275
DNA (1026bp) protein (342aa)
tdh3; L-threonine 3-dehydrogenase Tdh (EC:1.1.1.103)
L-threonine 3-dehydrogenase Tdh {ECO:0000313|EMBL:AFL52550.1}; EC=1.1.1.103 {ECO:0000313|EMBL:AFL52550.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
L-threonine 3-dehydrogenase Tdh n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X9J4_RHIFR
berkeley_reactor_200306_biofilm_scaffold_9338_25
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26343..27266)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003611444
Uncharacterized protein {ECO:0000313|EMBL:KGM32995.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_9338_26
Commensalibacter intestini, Commensalibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27358..28452)
DNA (1095bp) protein (365aa)
Putative uncharacterized protein n=1 Tax=Commensalibacter intestini A911 RepID=G6F281_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EHD13535.1}; TaxID=1088868 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae.;" source="Commensalibacter intestini A911.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_9338_27
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28603..29205)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ILF7_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL60156.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_9338_28
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29207..30055)
DNA (849bp) protein (283aa)
ABC-2 type transporter n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IB91_XANP2
ABC-2 type transporter
Transport permease protein {ECO:0000256|RuleBase:RU361157}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_9338_29
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30052..30798)
DNA (747bp) protein (249aa)
ABC transporter related n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IB92_XANP2
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABS65285.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_9338_30
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30848..31822)
DNA (975bp) protein (325aa)
40-residue YVTN family beta-propeller repeat protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IB93_XANP2
YVTN beta-propeller repeat-containing protein
40-residue YVTN family beta-propeller repeat protein {ECO:0000313|EMBL:ABS65286.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Displaying items 1-30 of 234 in total

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