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berkeley_reactor_200306_biofilm_scaffold_9338

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Displaying items 31-60 of 234 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_9338_31
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31907..33163)
DNA (1257bp) protein (419aa)
ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z4U5_9RHIZ
ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system {ECO:0000313|EMBL:EIM31237.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_9338_32
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33256..33795
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ILG4_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL60163.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_9338_33
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34000..34689
DNA (690bp) protein (230aa)
hypothetical protein id=12498417 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:EMS44190.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_9338_34
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34689..35321
DNA (633bp) protein (211aa)
Aspartate/glutamate/uridylate kinase n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZID7_METPB
aspartate/glutamate/uridylate kinase
Aspartate/glutamate/uridylate kinase {ECO:0000313|EMBL:ACA19343.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_9338_35
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35318..35878
DNA (561bp) protein (187aa)
Flavoprotein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BU40_GRABC
Flavoprotein
Flavoprotein {ECO:0000313|EMBL:ABI61662.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
berkeley_reactor_200306_biofilm_scaffold_9338_36
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35854..37260
DNA (1407bp) protein (469aa)
dihydropteroate synthase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000348FDC5
dihydropteroate synthase DHPS
Dihydropteroate synthase DHPS {ECO:0000313|EMBL:ACB79956.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
berkeley_reactor_200306_biofilm_scaffold_9338_37
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37264..37893
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ILG8_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL60167.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_9338_38
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37890..38453
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IB96_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS65289.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_9338_39
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38450..39589
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036E0AA8
YVTN beta-propeller repeat-containing protein
40-residue YVTN family beta-propeller repeat protein {ECO:0000313|EMBL:ABS65290.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_9338_40
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39615..40511)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036B5D72
Uncharacterized protein {ECO:0000313|EMBL:CDX32263.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_9338_41
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40610..41467
DNA (858bp) protein (286aa)
Transcriptional regulator n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98HR2_RHILO
HTH-type transcriptional regulator DgdR {ECO:0000313|EMBL:CDX32266.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_9338_42
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41474..42862)
DNA (1389bp) protein (463aa)
Major facilitator superfamily MFS_1 n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CPD1_VARPS
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACS21595.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
berkeley_reactor_200306_biofilm_scaffold_9338_43
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42972..43685
DNA (714bp) protein (238aa)
ArsR family transcriptional regulator n=1 Tax=Ralstonia sp. AU12-08 RepID=S9TBN3_9RALS
ArsR family transcriptional regulator {ECO:0000313|EMBL:KHK57710.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
ArsR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_9338_44
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43959..45011)
DNA (1053bp) protein (351aa)
H4MPT-linked C1 transfer pathway protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UF44_METS4
H4MPT-linked C1 transfer pathway protein
H4MPT-linked C1 transfer pathway protein {ECO:0000313|EMBL:ACA20076.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_9338_45
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45126..45836
DNA (711bp) protein (237aa)
Histidine biosynthesis protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ITX7_METNO
histidine biosynthesis protein
Histidine biosynthesis protein {ECO:0000313|EMBL:ACL60835.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_9338_46
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46063..46569)
DNA (507bp) protein (169aa)
Aldehyde-activating protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SF47_9RHIZ
aldehyde-activating protein
Aldehyde-activating protein {ECO:0000313|EMBL:AHB49148.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
berkeley_reactor_200306_biofilm_scaffold_9338_47
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46734..47570)
DNA (837bp) protein (279aa)
Triphosphoribosyl-dephospho-CoA synthase {ECO:0000256|SAAS:SAAS00100821}; EC=2.4.2.52 {ECO:0000256|SAAS:SAAS00100821};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Triphosphoribosyl-dephospho-CoA protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ITX5_METNO
triphosphoribosyl-dephospho-CoA protein
berkeley_reactor_200306_biofilm_scaffold_9338_48
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47567..48517)
DNA (951bp) protein (317aa)
alpha-L-glutamate ligase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034BC350
tetrahydromethanopterin synthesis protein
Tetrahydromethanopterin synthesis protein {ECO:0000313|EMBL:ACS39607.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
berkeley_reactor_200306_biofilm_scaffold_9338_49
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48514..49488)
DNA (975bp) protein (325aa)
Methenyltetrahydromethanopterin cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_00486}; EC=3.5.4.27 {ECO:0000256|HAMAP-Rule:MF_00486};; Methenyl-H4MPT cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_00486}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
Methenyltetrahydromethanopterin cyclohydrolase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=MCH_METS4
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase
berkeley_reactor_200306_biofilm_scaffold_9338_50
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49433..50653)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ITX2_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL60830.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_9338_51
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50619..51512)
DNA (894bp) protein (298aa)
Methylene-tetrahydromethanopterin dehydrogenase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ITX1_METNO
MtdB protein {ECO:0000313|EMBL:BAQ46422.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
methylene-tetrahydromethanopterin dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_9338_52
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51509..52534)
DNA (1026bp) protein (342aa)
GHMP kinase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00035D3450
beta-ribofuranosylaminobenzene 5'-phosphate synthase
Beta-ribofuranosylaminobenzene 5'-phosphate synthase family {ECO:0000313|EMBL:ACA20065.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_9338_53
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52731..53798
DNA (1068bp) protein (356aa)
tungsten-containing formylmethanofuran dehydrogenase subunit B n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0003742EE4
tungsten-containing formylmethanofuran dehydrogenase subunit B
Tungsten-containing formylmethanofuran dehydrogenase, subunit B {ECO:0000313|EMBL:ACA20064.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_9338_54
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53792..55426
DNA (1635bp) protein (545aa)
Formylmethanofuran dehydrogenase subunit A n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UF31_METS4
FhcA protein {ECO:0000313|EMBL:BAQ46419.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
formylmethanofuran dehydrogenase subunit A
berkeley_reactor_200306_biofilm_scaffold_9338_55
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55414..56322
DNA (909bp) protein (303aa)
Formylmethanofuran--tetrahydromethanopterin formyltransferase {ECO:0000256|HAMAP-Rule:MF_00579}; EC=2.3.1.101 {ECO:0000256|HAMAP-Rule:MF_00579};; H4MPT formyltransferase {ECO:0000256|HAMAP-Rule:MF_00579}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
Formylmethanofuran--tetrahydromethanopterin formyltransferase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UF30_METS4
formylmethanofuran--tetrahydromethanopterin formyltransferase
berkeley_reactor_200306_biofilm_scaffold_9338_56
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56319..57128
DNA (810bp) protein (270aa)
Formylmethanofuran dehydrogenase subunit C n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ITW6_METNO
formylmethanofuran dehydrogenase subunit C
Formylmethanofuran dehydrogenase subunit C {ECO:0000313|EMBL:ACL60824.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_9338_57
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57362..57568
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IB99_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS65292.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_9338_58
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57689..59236
DNA (1548bp) protein (516aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGA6_XANP2
integral membrane sensor signal transduction histidine kinase
berkeley_reactor_200306_biofilm_scaffold_9338_59
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59255..59980
DNA (726bp) protein (242aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGA5_XANP2
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABS67048.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_9338_60
unknown

Not on your lists

60198..60290
DNA (93bp) protein (31aa)

This feature has no annotations

Displaying items 31-60 of 234 in total

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