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berkeley_reactor_200306_biofilm_scaffold_9338_42

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(41474..42862)

Top 3 Functional Annotations

Value Algorithm Source
Major facilitator superfamily MFS_1 n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CPD1_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 70.2
  • Coverage: 456.0
  • Bit_score: 605
  • Evalue 4.00e-170
major facilitator superfamily protein similarity KEGG
DB: KEGG
  • Identity: 70.2
  • Coverage: 456.0
  • Bit_score: 605
  • Evalue 1.10e-170
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACS21595.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.2
  • Coverage: 456.0
  • Bit_score: 605
  • Evalue 5.60e-170

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1389
ATGGACGGCTCATCCTTTCCGCGCCAGGCCGGCATGGCGGCGGGCCGCCGCGGCCTCACCCTGACGGCGCTGTGCCTGGCGGTGCTGGTCGCGCAGGTCGACACCGCCGTGGTCAACCTGGCGACCCGGCCGATCGGCGATGCGCTCGGCGCCGGGGTCGGCGCCCTGCAATGGGTGGTGGACGGCTACAACCTCACCTATGCCGTGCTGCTGCTCACCGGCGGCCTGCTCGCCGATCTCTACGGCCGGCGCCGCATCTACATGGCCGGGGCGGCGGTGTTCACGGCGGCCTCGCTCGCCTGCGCCGCCGCGCCGTCGGTCGCGGTGCTGATCGGCGGCCGGGCGCTGGCCGGCGTCGGCGCGGCGCTGCTGCTGCCCGCCTCGCTGGCCATCATCCGGGTGGTCTGGCGCGGCGAGGCCGAGCGCGGCCGGGCGCTCGGCCTCTGGGCGGCCTGCAACGGCGTGGCCATGGCGATCGGCCCGACGCTCGGCGGCGTGCTGATCCGCAGCCTGGGCTGGCGCAGCATCTTCCTGGTGGTGGTGCCGCTCGCCCTCGCGGCGCTCGGGCTGGCGGCGGTTGCGATCCCCGAATCCGCCGATCCGACCGGACGGGACTTCGACGCGCCCGCCCAGATCCTCGGCGCCCTCGCCCTCGGGGGCCTGGCCTTCGCCGCCATCCAGTCCCGTGGCGAGCCGGTCACGGCCGGCATCGCCCTCGCGGTCTCGGCGCTCGCCCTGGCCCTGTTCGTCAGGGTCGAGGCCGGCCGGGGCGCCGCCGCCCTCGTGCCGCTCGATCTCTTCGGCATCCCGGCCTTCCGCGGCGCCGTCGCGGCGACATCGGGCATGACCTTCGGCATGTACGGCGTGCTGTTCCTGCTGCCGATGGCCTGGCAGGACGCGGGGCGGCTGGATGCGACCGGCGCCGGCCTGGCGCTGATGCCGATGGCCCTGGTCTTCGTCGCCGTGTCGCCCTTCTCCGGCGCCCTGGTCGCCCGGGTCGGGGCGCGGCGGGCGACCGCGGGCGGCGTCGCGGTGATCGGCTGCGGCCTCCTCGTCATCGGGCTCGGCGCCTTGCAGGCCGCGTTGCTGCCGGCGGAGATCGGCCTGGCGCTGACGGGGCTCGGCATGGGCTGCGCCACCGGCCCGCTGATGGGCGTCGCCGTCGGCGCCGTCGGCCCGGCCAGGGCGGGCACGGCCAGCGCCCTGATCAACGTCGCCCGCATGGCCGGCGCCACGCTCGGCGTTGCCCTGCTCGGCGCGGTGTTCGCCCTCGCGGGCGGCGGCGGCGCCGGCCTCGCCCCGGCGATGCTGCTCGGCGGCGCCGTGCAGATCCTGTGCGCCGGCGTCGCCTGGGTGACGACGCGGCCGGCTGCCGCGACGGCGACCTGA
PROTEIN sequence
Length: 463
MDGSSFPRQAGMAAGRRGLTLTALCLAVLVAQVDTAVVNLATRPIGDALGAGVGALQWVVDGYNLTYAVLLLTGGLLADLYGRRRIYMAGAAVFTAASLACAAAPSVAVLIGGRALAGVGAALLLPASLAIIRVVWRGEAERGRALGLWAACNGVAMAIGPTLGGVLIRSLGWRSIFLVVVPLALAALGLAAVAIPESADPTGRDFDAPAQILGALALGGLAFAAIQSRGEPVTAGIALAVSALALALFVRVEAGRGAAALVPLDLFGIPAFRGAVAATSGMTFGMYGVLFLLPMAWQDAGRLDATGAGLALMPMALVFVAVSPFSGALVARVGARRATAGGVAVIGCGLLVIGLGALQAALLPAEIGLALTGLGMGCATGPLMGVAVGAVGPARAGTASALINVARMAGATLGVALLGAVFALAGGGGAGLAPAMLLGGAVQILCAGVAWVTTRPAAATAT*