name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_53974_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2..1072
|
Type II and III secretion system protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR65_NITHX
Secretin {ECO:0000313|EMBL:KIZ45156.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
type II and III secretion system protein
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_2
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1097..1834
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030DB751
Pilus assembly protein {ECO:0000313|EMBL:ETR77374.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
pilus assembly protein CpaD
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_3
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1845..3098
|
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037CD3E6
CpaE protein {ECO:0000313|EMBL:BAQ49015.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
response regulator receiver protein
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_4
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3135..4571
|
Type II secretion system protein E n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VK23_RHOPX
CpaF protein {ECO:0000313|EMBL:BAQ49014.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
type II secretion system protein E
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_5
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4597..5613
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002ED3C8F
pilus assembly protein, type II secretion protein
Pilus assembly protein, type II secretion protein {ECO:0000313|EMBL:CAX24864.1}; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_6
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5624..6619
|
Type II/IV secretion system protein TadC, associated with Flp pilus assembly n=1 Tax=Rhodovulum sp. PH10 RepID=J6J280_9RHOB
Type II/IV secretion system protein TadC, associated with Flp pilus assembly {ECO:0000313|EMBL:EJW10955.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
type II secretion system protein
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_7
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6628..7047)
|
cdd; cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CPI1_9RHIZ
Cytidine deaminase {ECO:0000313|EMBL:EIZ86057.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_8
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7047..8018)
|
Inner-membrane translocator n=1 Tax=Nitratireductor indicus C115 RepID=K2N9G7_9RHIZ
Inner-membrane translocator {ECO:0000313|EMBL:KFB08314.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
sugar ABC transporter permease
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_9
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8020..9132)
|
Putative amino acid or sugar ABC transport system, permease protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2T7_POLGS
amino acid ABC transporter permease
Putative amino acid or sugar ABC transport system, permease protein {ECO:0000313|EMBL:ADZ72111.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_10
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9129..10646)
|
ATPase component of uncharacterized ABC-type transporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPA7_9RHIZ
ATPase component of uncharacterized ABC-type transporter {ECO:0000313|EMBL:EIM25799.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Putative carbohydrate transport ATP-binding protein
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_11
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10792..11787)
|
UPI0003CEF791 related cluster n=1 Tax=unknown RepID=UPI0003CEF791
Basic membrane lipoprotein {ECO:0000313|EMBL:CDX32280.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
basic membrane lipoprotein
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_12 |
Not on your lists |
comp(12247..12975)
|
Putative Phage shock protein A (PspA) n=1 Tax=mine drainage metagenome RepID=E6PRX3_9ZZZZ
Putative Phage shock protein A (PspA) {ECO:0000313|EMBL:CBH97679.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
phage shock protein A, PspA
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_13
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12988..13812)
|
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZK26_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKM99765.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
conserved protein of unknown function
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_14
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13809..14750)
|
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XT15_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKM99764.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
conserved protein of unknown function
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_15
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14768..15157)
|
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262545A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK57606.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_16
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15379..16596
|
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KKX7_9SPHN
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16550..17152)
|
Alpha-ketoglutarate-dependent dioxygenase AlkB {ECO:0000313|EMBL:EYR78906.1}; EC=1.14.11.33 {ECO:0000313|EMBL:EYR78906.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003641666
alkylated DNA repair protein
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_18
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17474..19384
|
molecular chaperone DnaK n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031E1B2C
chaperone protein DnaK
Chaperone protein DnaK {ECO:0000255|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000255|HAMAP-Rule:MF_00332}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_19
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19669..20817
|
molecular chaperone DnaJ n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003168411
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
chaperone protein DnaJ
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_20
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20814..21683
|
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000360029B
RmlD-like substrate binding protein {ECO:0000313|EMBL:EIM24683.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
NAD-dependent epimerase/dehydratase
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21843..22676
|
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037D9327
Flp pilus assembly protein TadD {ECO:0000313|EMBL:KFC70957.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Flp pilus assembly TadD-like protein
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_22
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22683..23975)
|
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
eno; phosphopyruvate hydratase (EC:4.2.1.11)
Enolase n=1 Tax=Burkholderia terrae BS001 RepID=I5D2M8_9BURK
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_23
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23972..24964)
|
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037D2F07
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:KGM34924.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
aminoglycoside phosphotransferase (antibiotic resistance protein)
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24973..25668)
|
HAD family hydrolase n=1 Tax=Afipia birgiae RepID=UPI0002F14E09
HAD family hydrolase {ECO:0000313|EMBL:KIZ41346.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
pyrimidine 5-nucleotidase
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_25
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25853..26236
|
Uncharacterized protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LN56_RUEPO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAV96583.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_26
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26274..27179)
|
Acetylglutamate kinase {ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.- {ECO:0000256|SAAS:SAAS00277142};; EC=2.7.2.8 {ECO:0000256|SAAS:SAAS00245383};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Acetylglutamate kinase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0G2_STAND
acetylglutamate kinase
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_27
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27345..28961)
|
Arabinose efflux permease family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z303_9RHIZ
Arabinose efflux permease family protein {ECO:0000313|EMBL:EIM30595.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
major facilitator transporter
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_28
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29097..30629)
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031E1FD5
5'-nucleotidase domain-containing protein
5'-Nucleotidase domain protein {ECO:0000313|EMBL:ACA17021.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_29
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
30757..31470
|
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI000364C9DD
Uncharacterized protein {ECO:0000313|EMBL:KJB90910.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
GDSL family lipase
|
|
berkeley_reactor_200306_biofilm_scaffold_53974_30
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(31483..32733)
|
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ALL5_AZOBR
cyclopropane-fatty-acyl-phospholipid synthase
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:AIB11619.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
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